Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RX141_RS01945 | Genome accession | NZ_CP136353 |
| Coordinates | 379382..379840 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain ES-1390 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 371715..409517 | 379382..379840 | within | 0 |
Gene organization within MGE regions
Location: 371715..409517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RX141_RS01885 (RX141_01885) | - | 371901..372287 (+) | 387 | WP_002377929.1 | hypothetical protein | - |
| RX141_RS01890 (RX141_01890) | - | 372433..372693 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| RX141_RS01895 (RX141_01895) | - | 372704..373582 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| RX141_RS01900 (RX141_01900) | - | 373602..374462 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| RX141_RS01905 (RX141_01905) | - | 374488..375758 (+) | 1271 | Protein_351 | CHAP domain-containing protein | - |
| RX141_RS01910 (RX141_01910) | - | 375761..376378 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| RX141_RS01915 (RX141_01915) | - | 376362..376778 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| RX141_RS01920 (RX141_01920) | - | 376778..377092 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| RX141_RS01925 (RX141_01925) | - | 377085..378119 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| RX141_RS01930 (RX141_01930) | - | 378109..378384 (+) | 276 | WP_002360793.1 | hypothetical protein | - |
| RX141_RS01935 (RX141_01935) | - | 378384..378773 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| RX141_RS01940 (RX141_01940) | - | 378805..379287 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| RX141_RS01945 (RX141_01945) | ssb | 379382..379840 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| RX141_RS01950 (RX141_01950) | - | 379945..382437 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| RX141_RS01955 (RX141_01955) | - | 382394..382792 (+) | 399 | WP_002370287.1 | lipocalin-like domain-containing protein | - |
| RX141_RS01960 (RX141_01960) | - | 382805..385150 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| RX141_RS01965 (RX141_01965) | - | 385137..387395 (+) | 2259 | WP_010710132.1 | type IV secretory system conjugative DNA transfer family protein | - |
| RX141_RS01970 (RX141_01970) | - | 387918..388703 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| RX141_RS01975 (RX141_01975) | - | 388709..389197 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| RX141_RS01980 (RX141_01980) | - | 389789..390055 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| RX141_RS01985 (RX141_01985) | - | 390088..390588 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| RX141_RS01990 (RX141_01990) | - | 390601..390849 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| RX141_RS01995 (RX141_01995) | - | 390925..391341 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| RX141_RS02000 (RX141_02000) | - | 391365..391949 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| RX141_RS02005 (RX141_02005) | - | 392060..392326 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| RX141_RS02010 (RX141_02010) | - | 392319..392594 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| RX141_RS02015 (RX141_02015) | - | 392785..393429 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| RX141_RS02020 (RX141_02020) | - | 393562..394444 (+) | 883 | Protein_374 | IS256 family transposase | - |
| RX141_RS02025 (RX141_02025) | - | 394749..395786 (-) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| RX141_RS02030 (RX141_02030) | - | 395812..396750 (-) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| RX141_RS02035 (RX141_02035) | - | 396878..397147 (-) | 270 | Protein_377 | LPXTG cell wall anchor domain-containing protein | - |
| RX141_RS02040 (RX141_02040) | - | 397237..397422 (+) | 186 | WP_002358660.1 | hypothetical protein | - |
| RX141_RS02045 (RX141_02045) | - | 397454..398062 (+) | 609 | Protein_379 | IS6 family transposase | - |
| RX141_RS02050 (RX141_02050) | bsh | 398731..399705 (-) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| RX141_RS02055 (RX141_02055) | - | 399929..400573 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| RX141_RS02060 (RX141_02060) | - | 400746..401060 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| RX141_RS02065 (RX141_02065) | cylR2 | 401398..401598 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| RX141_RS02070 (RX141_02070) | - | 402002..402157 (+) | 156 | WP_002403042.1 | mersacidin family lantibiotic | - |
| RX141_RS02075 (RX141_02075) | - | 402218..405199 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| RX141_RS02080 (RX141_02080) | - | 405211..407355 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| RX141_RS02085 (RX141_02085) | - | 407352..408590 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=890232 RX141_RS01945 WP_002365911.1 379382..379840(+) (ssb) [Enterococcus faecalis strain ES-1390]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=890232 RX141_RS01945 WP_002365911.1 379382..379840(+) (ssb) [Enterococcus faecalis strain ES-1390]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |