Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AAFA23_RS03925 Genome accession   NZ_CP151704
Coordinates   804882..805397 (-) Length   171 a.a.
NCBI ID   WP_342040225.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain F19-10-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799882..810397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA23_RS03900 (AAFA23_03900) - 800429..802072 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  AAFA23_RS03905 (AAFA23_03905) - 802065..802550 (+) 486 WP_000935248.1 DUF934 domain-containing protein -
  AAFA23_RS03910 (AAFA23_03910) - 802632..802985 (+) 354 WP_000457779.1 SMR family transporter -
  AAFA23_RS03915 (AAFA23_03915) - 803028..803471 (-) 444 WP_001176580.1 VOC family protein -
  AAFA23_RS03920 (AAFA23_03920) - 803598..804773 (-) 1176 WP_000129969.1 thiolase family protein -
  AAFA23_RS03925 (AAFA23_03925) fimT 804882..805397 (-) 516 WP_342040225.1 GspH/FimT family pseudopilin Machinery gene
  AAFA23_RS03930 (AAFA23_03930) omp38 805778..806806 (+) 1029 WP_000777889.1 outer membrane protein Omp38 -
  AAFA23_RS03935 (AAFA23_03935) - 806931..807089 (-) 159 WP_000692859.1 hypothetical protein -
  AAFA23_RS03940 (AAFA23_03940) - 807093..808298 (-) 1206 WP_000512698.1 RtcB family protein -
  AAFA23_RS03945 (AAFA23_03945) - 808575..810035 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19537.75 Da        Isoelectric Point: 8.4927

>NTDB_id=890117 AAFA23_RS03925 WP_342040225.1 804882..805397(-) (fimT) [Acinetobacter baumannii strain F19-10-2]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVSLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=890117 AAFA23_RS03925 WP_342040225.1 804882..805397(-) (fimT) [Acinetobacter baumannii strain F19-10-2]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGAGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421