Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU46_RS13700 Genome accession   NZ_AP024866
Coordinates   2965940..2967070 (-) Length   376 a.a.
NCBI ID   WP_141273289.1    Uniprot ID   A0A4Y3ITN5
Organism   Vibrio comitans strain LMG 23416     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2960940..2972070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS13670 hemF 2961591..2962496 (-) 906 WP_337972449.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU46_RS13675 - 2962500..2963057 (-) 558 WP_167495440.1 L-threonylcarbamoyladenylate synthase -
  OCU46_RS13680 purE 2963242..2963727 (+) 486 WP_021714834.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU46_RS13685 - 2963732..2964847 (+) 1116 WP_141273285.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU46_RS13690 - 2964902..2965456 (-) 555 WP_141273287.1 type I DNA topoisomerase -
  OCU46_RS13695 - 2965464..2965937 (-) 474 WP_102321649.1 DUF494 family protein -
  OCU46_RS13700 dprA 2965940..2967070 (-) 1131 WP_141273289.1 DNA-processing protein DprA Machinery gene
  OCU46_RS13705 def 2967180..2967692 (+) 513 WP_141273291.1 peptide deformylase -
  OCU46_RS13710 fmt 2967706..2968653 (+) 948 WP_141273293.1 methionyl-tRNA formyltransferase -
  OCU46_RS13715 rsmB 2968709..2969998 (+) 1290 WP_141273295.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU46_RS13720 trkA 2970026..2971402 (+) 1377 WP_017029768.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41376.31 Da        Isoelectric Point: 6.7525

>NTDB_id=88937 OCU46_RS13700 WP_141273289.1 2965940..2967070(-) (dprA) [Vibrio comitans strain LMG 23416]
MTEQQITAWLTLCMTPRLSGVRLQKILEYLSPQELTSLSKKELLSLKFTESQVRFLTAKSNQSVDKCLEWENKDGNHLLI
AEDKEQYPQLLKEIPGFPPILFVQGEVEALRSTQVGVVGSRNSTQDGLYITRQFSSELTRLGVTITSGLALGVDGHAHQA
CLEQNGKTIAVLGSGFDFLYPKQHQSLAFRIKENGALVSEFAPFYPPRAYNFPRRNRIISGLSVGVLVVEAAQKSGSLIT
ARFALEQGRDVYAVPGSILNPNAAGCNQLLRDGAVLVRDARDIVHEINGLVNWSSTIQQEATLSSPLSVNKQQERGQTEA
GDQPILNLLGERPVAVDFLAERTHLPVNQVMMQLLELELQGIVASVVGGYIRLRGS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=88937 OCU46_RS13700 WP_141273289.1 2965940..2967070(-) (dprA) [Vibrio comitans strain LMG 23416]
ATGACAGAACAACAGATCACAGCATGGCTTACGCTCTGTATGACGCCCCGTTTAAGTGGAGTTAGGCTACAGAAAATCCT
TGAATATCTCTCTCCGCAAGAGCTGACATCTCTGTCAAAAAAAGAGCTACTTTCTCTTAAATTTACAGAATCACAGGTAC
GGTTTTTAACGGCCAAATCAAATCAAAGTGTCGATAAGTGCTTAGAGTGGGAGAATAAAGACGGTAACCACTTACTCATT
GCAGAAGACAAAGAACAGTATCCCCAGTTGCTAAAGGAAATCCCTGGTTTTCCTCCGATACTGTTTGTACAAGGGGAGGT
GGAAGCTCTGCGCTCGACTCAAGTTGGTGTCGTTGGTAGCCGAAATAGTACTCAAGATGGTTTGTACATTACTCGCCAGT
TTTCATCCGAATTGACTCGCTTAGGGGTGACGATCACCAGTGGCCTAGCTTTGGGGGTAGATGGCCACGCACATCAAGCT
TGCTTGGAGCAGAATGGCAAAACAATTGCCGTGTTGGGAAGCGGCTTTGATTTCTTGTACCCAAAGCAGCACCAGTCGTT
AGCATTCAGAATTAAAGAAAATGGCGCCCTTGTCTCTGAATTCGCTCCTTTTTACCCGCCGAGAGCGTATAACTTTCCGA
GGCGAAATCGAATCATCAGTGGGTTATCTGTTGGCGTGCTGGTGGTTGAGGCGGCGCAAAAAAGTGGTTCTTTAATAACG
GCTCGTTTTGCTCTAGAACAAGGGCGTGATGTGTACGCTGTTCCAGGGTCGATACTTAATCCCAATGCAGCGGGATGCAA
TCAATTGCTTCGTGATGGAGCGGTATTAGTGAGAGATGCACGAGATATTGTTCATGAAATTAATGGCTTAGTTAACTGGT
CTTCTACAATACAACAAGAGGCGACTTTATCTTCGCCGTTGTCAGTTAACAAGCAACAAGAAAGAGGGCAAACTGAGGCA
GGAGATCAGCCAATACTAAATCTGTTGGGAGAGAGACCCGTGGCCGTTGATTTTTTGGCAGAAAGGACCCATTTACCCGT
AAATCAGGTTATGATGCAGTTATTAGAGCTGGAGCTTCAAGGTATAGTGGCTTCAGTGGTTGGTGGTTACATTAGATTAA
GGGGGAGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-369)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3ITN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.936

100

0.489
  dprA Vibrio cholerae strain A1552

48.396

99.468

0.481
  dprA Glaesserella parasuis strain SC1401

41.823

99.202

0.415
  dprA Haemophilus influenzae Rd KW20

46.108

88.83

0.41
  dprA Neisseria meningitidis strain C311

37.531

100

0.396
  dprA Neisseria meningitidis MC58

37.531

100

0.396
  dprA Legionella pneumophila strain ERS1305867

46.885

81.117

0.38
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.949

100

0.378
  dprA Acinetobacter baylyi ADP1

37.203

100

0.375

Multiple sequence alignment