Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OC457_RS13880 Genome accession   NZ_AP024854
Coordinates   2959827..2960927 (-) Length   366 a.a.
NCBI ID   WP_080176156.1    Uniprot ID   A0A1T4UN03
Organism   Photobacterium toruni strain CECT 9189     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2954827..2965927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC457_RS13850 hemF 2955442..2956362 (-) 921 WP_080176150.1 oxygen-dependent coproporphyrinogen oxidase -
  OC457_RS13855 tsaC 2956366..2956923 (-) 558 WP_080176151.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  OC457_RS13860 purE 2957118..2957606 (+) 489 WP_080176152.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OC457_RS13865 - 2957606..2958724 (+) 1119 WP_080176153.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OC457_RS13870 - 2958788..2959348 (-) 561 WP_080176154.1 type I DNA topoisomerase -
  OC457_RS13875 - 2959351..2959824 (-) 474 WP_080176155.1 DUF494 family protein -
  OC457_RS13880 dprA 2959827..2960927 (-) 1101 WP_080176156.1 DNA-processing protein DprA Machinery gene
  OC457_RS13885 - 2960933..2962003 (-) 1071 WP_080176157.1 LysM peptidoglycan-binding domain-containing protein -
  OC457_RS13890 def 2962352..2962852 (+) 501 WP_080176158.1 peptide deformylase -
  OC457_RS13895 fmt 2962877..2963821 (+) 945 WP_080176159.1 methionyl-tRNA formyltransferase -
  OC457_RS13900 rsmB 2963907..2965187 (+) 1281 WP_080176160.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39260.98 Da        Isoelectric Point: 7.5091

>NTDB_id=88854 OC457_RS13880 WP_080176156.1 2959827..2960927(-) (dprA) [Photobacterium toruni strain CECT 9189]
MTETELIAWLQLAAVPSLGGSRIQRLLTHITPPQLTAMTTEQLQQCGLTAKQIQAFLHPNQSRLQHTLQWQQVSQQHILT
LASPYYPHLLKQIASPPPILFVRGDIACLGAPQIAVIGSRSASIDGRESAFHFSKALAANNYVVTSGLALGIDGQAHQGA
LQAGGLTIAVLGSGLDQIYPARHRSLAASIAEQGALVSEFWPQEQPRPQNFPRRNRVISGLSAGVLVIEAAQKSGSLITA
RYALEQGREVFALPGSIHNPASRGCNALIKSGAKLVESPADIYEEVGSLTECAINHQIGVPLATKENEELPFPALLANVG
TEATPVDVVAERCKQPIHQILPQLLELELSGWVTAVPGGYIRTRRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=88854 OC457_RS13880 WP_080176156.1 2959827..2960927(-) (dprA) [Photobacterium toruni strain CECT 9189]
ATGACTGAAACTGAACTTATTGCATGGTTACAACTTGCGGCTGTCCCCTCATTGGGTGGCAGCCGTATTCAACGCCTACT
AACGCATATCACACCGCCACAGCTTACTGCGATGACAACTGAACAGCTGCAGCAATGTGGGTTGACGGCAAAACAAATAC
AGGCTTTTTTGCACCCTAATCAATCTCGATTGCAACATACTCTGCAATGGCAGCAAGTCTCGCAACAGCATATTTTGACC
CTCGCTTCACCGTATTATCCGCATTTATTAAAGCAGATCGCGTCACCGCCACCGATATTATTTGTGCGGGGTGATATAGC
CTGTTTGGGGGCTCCACAAATTGCCGTGATCGGTAGCCGTTCTGCATCGATTGATGGCCGAGAATCAGCCTTTCATTTTT
CAAAAGCATTAGCGGCTAATAATTACGTGGTGACCAGTGGCTTGGCTCTGGGGATTGACGGTCAGGCACATCAAGGTGCG
TTGCAAGCTGGAGGGTTAACCATTGCGGTGTTAGGTTCTGGGCTTGATCAGATTTATCCAGCACGACATCGGTCATTGGC
TGCCAGTATTGCAGAACAAGGTGCATTAGTATCAGAATTTTGGCCGCAAGAGCAACCTCGTCCGCAAAATTTTCCGCGTC
GAAATCGTGTCATTAGTGGTTTATCTGCCGGTGTATTAGTGATTGAGGCGGCTCAAAAAAGTGGTTCTCTAATTACTGCT
CGTTATGCTTTAGAACAAGGACGAGAAGTTTTTGCACTGCCAGGTTCTATTCATAATCCTGCCAGTCGTGGTTGTAATGC
GCTGATTAAATCAGGTGCTAAACTGGTAGAAAGTCCTGCTGATATTTATGAAGAGGTAGGAAGCCTGACAGAATGTGCAA
TAAACCATCAAATAGGCGTGCCTTTAGCAACGAAGGAAAATGAAGAATTGCCATTTCCTGCGCTGTTGGCTAACGTAGGC
ACCGAAGCAACACCCGTAGATGTCGTTGCTGAACGCTGTAAACAACCCATCCACCAAATTTTACCGCAATTATTAGAATT
AGAACTGTCTGGTTGGGTGACTGCAGTGCCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)

DprA winged helix domain (DprA_WH)

(313-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4UN03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.104

100

0.571
  dprA Vibrio cholerae strain A1552

52.022

100

0.527
  dprA Haemophilus influenzae Rd KW20

47.605

91.257

0.434
  dprA Legionella pneumophila strain ERS1305867

47.164

91.53

0.432
  dprA Glaesserella parasuis strain SC1401

55.088

77.869

0.429
  dprA Neisseria meningitidis strain C311

39.394

100

0.426
  dprA Neisseria meningitidis MC58

39.394

100

0.426
  dprA Neisseria gonorrhoeae MS11

38.579

100

0.415
  dprA Neisseria gonorrhoeae strain FA1090

38.071

100

0.41
  dprA Acinetobacter baylyi ADP1

41.867

90.71

0.38

Multiple sequence alignment