Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCU77_RS02100 Genome accession   NZ_AP024852
Coordinates   435770..436990 (-) Length   406 a.a.
NCBI ID   WP_048899245.1    Uniprot ID   A0A0J8V9W4
Organism   Photobacterium swingsii strain CECT 7576     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430770..441990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU77_RS02075 mutT 432690..433112 (+) 423 WP_048899242.1 8-oxo-dGTP diphosphatase MutT -
  OCU77_RS02080 yacG 433171..433377 (-) 207 WP_084711799.1 DNA gyrase inhibitor YacG -
  OCU77_RS02085 zapD 433386..434123 (-) 738 WP_048899283.1 cell division protein ZapD -
  OCU77_RS02090 coaE 434164..434769 (-) 606 WP_048899243.1 dephospho-CoA kinase -
  OCU77_RS02095 pilD 434772..435650 (-) 879 WP_048899244.1 A24 family peptidase Machinery gene
  OCU77_RS02100 pilC 435770..436990 (-) 1221 WP_048899245.1 type II secretion system F family protein Machinery gene
  OCU77_RS02105 pilB 437027..438712 (-) 1686 WP_107302991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU77_RS02110 - 438712..439161 (-) 450 WP_048899246.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCU77_RS02115 nadC 439469..440368 (-) 900 WP_048899284.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCU77_RS02120 ampD 440566..441132 (+) 567 WP_048899247.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44833.73 Da        Isoelectric Point: 10.4618

>NTDB_id=88796 OCU77_RS02100 WP_048899245.1 435770..436990(-) (pilC) [Photobacterium swingsii strain CECT 7576]
MKQTNKLRYYHWRGTNSAGRKVSGVIVGFQEQEAREKLLEQRIQVKKIKRRNPSTFARMKNKMEATDVTAVTRQLATMIQ
SGVPVVQSFKLIAESHQKSEVRATLSQINKQVEAGASLSKALRTSSPLFDNFYCDLVATGEETGHLGQIFERLATYREKH
EAMRKKVIKAMIYPGMVTLTAIIVTVMMLVFVIPQFADIFQSFGAQLPWFTRQVIKASNLLTSNGLLISLSLIAAIAGFA
VSYKKSPRLQLAVSRWSLRFPILGTVFMKATIARFARTLATTFTAGIPLLSGLQSAGKTAGNLHIQRAVEQAHTAAAAGM
PLYLSLRQCNEFPELMLQMVMIGEESGSLDDMLNKIANLYEGDVDNTVDNLGKIIEPLIIIILGGLIGGLLVAMYMPIFT
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=88796 OCU77_RS02100 WP_048899245.1 435770..436990(-) (pilC) [Photobacterium swingsii strain CECT 7576]
ATGAAGCAAACCAACAAGCTACGTTATTATCACTGGCGAGGAACCAATAGCGCAGGGAGAAAAGTCTCTGGCGTGATTGT
CGGCTTTCAAGAACAAGAAGCCCGAGAAAAACTACTAGAACAACGCATCCAAGTCAAAAAGATAAAACGACGTAATCCAT
CGACGTTTGCCCGGATGAAAAACAAGATGGAAGCCACCGATGTCACGGCCGTAACGCGCCAACTGGCAACCATGATTCAA
TCTGGTGTCCCTGTGGTACAGTCATTCAAGCTCATCGCTGAAAGCCATCAGAAAAGCGAAGTCCGTGCGACCTTAAGTCA
AATCAATAAACAAGTTGAAGCAGGGGCATCCTTGTCTAAAGCACTGCGCACAAGCTCGCCCCTGTTCGACAATTTTTATT
GTGATTTAGTCGCAACGGGGGAAGAGACTGGTCATTTAGGGCAAATATTTGAACGTCTTGCCACATACAGGGAAAAGCAT
GAGGCAATGCGCAAGAAAGTCATCAAAGCAATGATTTATCCCGGTATGGTGACGCTTACCGCCATTATCGTCACTGTGAT
GATGCTGGTGTTTGTGATCCCACAATTTGCCGATATTTTCCAAAGCTTTGGCGCGCAATTACCTTGGTTTACACGTCAAG
TCATTAAGGCTTCAAATCTACTCACCTCCAATGGATTACTTATTTCACTATCTTTAATTGCTGCGATTGCAGGTTTCGCT
GTCAGTTATAAAAAATCACCTCGCCTTCAACTGGCTGTTAGTCGATGGAGTTTACGCTTTCCTATTCTAGGCACCGTATT
TATGAAAGCCACCATCGCACGATTTGCTCGCACACTTGCCACCACCTTTACAGCAGGTATCCCTTTACTGTCAGGGCTAC
AATCGGCAGGTAAAACCGCAGGCAATCTCCATATTCAACGAGCGGTCGAACAAGCCCATACCGCCGCTGCAGCTGGCATG
CCACTGTATCTCTCTTTGCGTCAATGCAATGAATTTCCTGAGCTCATGCTACAGATGGTGATGATAGGTGAAGAGTCAGG
TTCACTCGATGACATGCTCAATAAAATTGCCAATTTGTACGAAGGCGATGTTGATAATACAGTCGATAATCTGGGTAAAA
TCATCGAACCTTTGATCATTATTATCCTCGGTGGTCTCATCGGTGGACTATTGGTGGCTATGTATATGCCAATCTTCACC
CTGATGAGTGTAATCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8V9W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.208

99.507

0.539
  pilC Vibrio campbellii strain DS40M4

52.12

98.768

0.515
  pilG Neisseria gonorrhoeae MS11

42.289

99.015

0.419
  pilG Neisseria meningitidis 44/76-A

42.145

98.768

0.416
  pilC Acinetobacter baylyi ADP1

40.741

99.754

0.406
  pilC Acinetobacter baumannii D1279779

39.409

100

0.394
  pilC Pseudomonas stutzeri DSM 10701

39.646

97.537

0.387
  pilC Legionella pneumophila strain ERS1305867

38.177

100

0.382

Multiple sequence alignment