Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OCU77_RS02095 Genome accession   NZ_AP024852
Coordinates   434772..435650 (-) Length   292 a.a.
NCBI ID   WP_048899244.1    Uniprot ID   -
Organism   Photobacterium swingsii strain CECT 7576     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429772..440650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU77_RS02070 secA 429852..432581 (+) 2730 WP_048899241.1 preprotein translocase subunit SecA -
  OCU77_RS02075 mutT 432690..433112 (+) 423 WP_048899242.1 8-oxo-dGTP diphosphatase MutT -
  OCU77_RS02080 yacG 433171..433377 (-) 207 WP_084711799.1 DNA gyrase inhibitor YacG -
  OCU77_RS02085 zapD 433386..434123 (-) 738 WP_048899283.1 cell division protein ZapD -
  OCU77_RS02090 coaE 434164..434769 (-) 606 WP_048899243.1 dephospho-CoA kinase -
  OCU77_RS02095 pilD 434772..435650 (-) 879 WP_048899244.1 A24 family peptidase Machinery gene
  OCU77_RS02100 pilC 435770..436990 (-) 1221 WP_048899245.1 type II secretion system F family protein Machinery gene
  OCU77_RS02105 pilB 437027..438712 (-) 1686 WP_107302991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU77_RS02110 - 438712..439161 (-) 450 WP_048899246.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCU77_RS02115 nadC 439469..440368 (-) 900 WP_048899284.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32940.32 Da        Isoelectric Point: 6.4355

>NTDB_id=88795 OCU77_RS02095 WP_048899244.1 434772..435650(-) (pilD) [Photobacterium swingsii strain CECT 7576]
MELLTYYPWLYPVFAALFGLLIGSFLNVVIYRLPIMMEREWKRDCIDCFPEFQQGKTTEEQPTFNLSIPRSRCPKCNALI
TAKDNIPVLSWLWLKGRCRHCQHPISARYPLVELLTAAMVATVALLLPLSEWSVAVIFFTFTLIALTFIDIDKMLLPDQL
TLPLMWAGLLLAVLGVSPVSIEDALIGAMFGYLSLWSLYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPFVILLSSL
IGAICGIILMRIQKSDTQAPFSFGPYLALAGWVSMLWGTQIIDWYLTSYLGL

Nucleotide


Download         Length: 879 bp        

>NTDB_id=88795 OCU77_RS02095 WP_048899244.1 434772..435650(-) (pilD) [Photobacterium swingsii strain CECT 7576]
ATGGAACTGCTGACCTATTACCCTTGGCTTTACCCTGTTTTCGCCGCCCTATTCGGTTTATTAATTGGCAGCTTCTTAAA
TGTAGTGATCTACCGCTTACCTATCATGATGGAGCGTGAGTGGAAACGTGATTGCATAGACTGTTTTCCCGAATTTCAGC
AAGGTAAAACAACAGAAGAACAACCGACTTTCAACCTCAGCATCCCCCGATCTCGCTGCCCAAAGTGTAATGCACTCATT
ACCGCCAAAGACAATATTCCGGTATTGAGCTGGCTATGGTTAAAAGGGCGCTGCCGTCACTGTCAGCACCCTATTAGCGC
GCGCTATCCTTTGGTTGAACTGCTTACGGCTGCGATGGTAGCCACAGTCGCACTACTGCTCCCTCTCTCTGAGTGGTCAG
TGGCCGTGATCTTTTTTACCTTCACCTTGATCGCCTTAACCTTTATCGATATCGATAAGATGCTACTGCCCGATCAACTC
ACTCTGCCATTGATGTGGGCAGGTTTATTGCTCGCCGTATTAGGGGTCAGCCCCGTATCAATCGAAGATGCGCTTATCGG
TGCTATGTTCGGTTACCTATCACTATGGAGCCTGTATTGGTGCTTTAAGTTACTGACAGGTAAAGAGGGAATGGGATACG
GAGATTTCAAGCTGTTAGCTGCACTTGGCGCATGGCTAGGCTGGCAATCATTACCGTTTGTGATCCTACTATCTTCGTTA
ATTGGTGCAATCTGTGGCATTATTCTAATGAGAATTCAAAAATCAGATACCCAAGCGCCTTTCTCCTTTGGCCCTTACCT
TGCGCTGGCTGGCTGGGTAAGCATGTTATGGGGAACGCAAATTATTGATTGGTATCTGACAAGCTACTTAGGACTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

63.014

100

0.63
  pilD Vibrio cholerae strain A1552

62.199

99.658

0.62
  pilD Acinetobacter baumannii D1279779

50.538

95.548

0.483
  pilD Acinetobacter nosocomialis M2

50.538

95.548

0.483
  pilD Neisseria gonorrhoeae MS11

46.713

98.973

0.462

Multiple sequence alignment