Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RS400_RS18265 Genome accession   NZ_CP135602
Coordinates   3907978..3909237 (+) Length   419 a.a.
NCBI ID   WP_005414309.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain SI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3902978..3914237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS400_RS18245 (RS400_18245) pilR 3903188..3904561 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  RS400_RS18250 (RS400_18250) pilB 3904687..3906420 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RS400_RS18255 (RS400_18255) pilA/pilAI 3906643..3907050 (-) 408 WP_005414307.1 pilin Machinery gene
  RS400_RS18260 (RS400_18260) - 3907203..3907625 (-) 423 WP_061201472.1 pilin -
  RS400_RS18265 (RS400_18265) pilC 3907978..3909237 (+) 1260 WP_005414309.1 type II secretion system F family protein Machinery gene
  RS400_RS18270 (RS400_18270) - 3909245..3910108 (+) 864 WP_005410800.1 A24 family peptidase -
  RS400_RS18275 (RS400_18275) coaE 3910120..3910731 (+) 612 WP_005414310.1 dephospho-CoA kinase -
  RS400_RS18280 (RS400_18280) - 3910991..3911377 (-) 387 WP_099524706.1 hypothetical protein -
  RS400_RS18285 (RS400_18285) - 3911860..3913188 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  RS400_RS18290 (RS400_18290) - 3913193..3913870 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45872.30 Da        Isoelectric Point: 10.1071

>NTDB_id=887154 RS400_RS18265 WP_005414309.1 3907978..3909237(+) (pilC) [Stenotrophomonas maltophilia strain SI1]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=887154 RS400_RS18265 WP_005414309.1 3907978..3909237(+) (pilC) [Stenotrophomonas maltophilia strain SI1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTACGCCGCC
AGGGCATCAACCCGGGACAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGATCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCAACGATGATGAAATCCGGCGTGCCGATCGTGTCGTCGCTTGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGTGAAGGCGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCAGTCGGCGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTACCAGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTGGGTTACCCGGTGAACATGTCGATGAAACAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Acinetobacter baylyi ADP1

51.351

97.136

0.499
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

40.898

95.704

0.391
  pilC Thermus thermophilus HB27

37.811

95.943

0.363