Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   RS400_RS18255 Genome accession   NZ_CP135602
Coordinates   3906643..3907050 (-) Length   135 a.a.
NCBI ID   WP_005414307.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain SI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3901643..3912050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS400_RS18245 (RS400_18245) pilR 3903188..3904561 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  RS400_RS18250 (RS400_18250) pilB 3904687..3906420 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RS400_RS18255 (RS400_18255) pilA/pilAI 3906643..3907050 (-) 408 WP_005414307.1 pilin Machinery gene
  RS400_RS18260 (RS400_18260) - 3907203..3907625 (-) 423 WP_061201472.1 pilin -
  RS400_RS18265 (RS400_18265) pilC 3907978..3909237 (+) 1260 WP_005414309.1 type II secretion system F family protein Machinery gene
  RS400_RS18270 (RS400_18270) - 3909245..3910108 (+) 864 WP_005410800.1 A24 family peptidase -
  RS400_RS18275 (RS400_18275) coaE 3910120..3910731 (+) 612 WP_005414310.1 dephospho-CoA kinase -
  RS400_RS18280 (RS400_18280) - 3910991..3911377 (-) 387 WP_099524706.1 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14272.52 Da        Isoelectric Point: 6.2068

>NTDB_id=887153 RS400_RS18255 WP_005414307.1 3906643..3907050(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain SI1]
MNTQKGFTLIELMIVVAIIAILAAIAMVAFQPYIVRTQLTAALADISPGKTLVEIVVYQGRPVSEVTPQLIGGAQNAHCS
SVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=887153 RS400_RS18255 WP_005414307.1 3906643..3907050(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain SI1]
ATGAACACACAGAAGGGCTTCACGCTCATCGAGCTGATGATCGTGGTGGCCATCATTGCCATACTTGCCGCGATCGCGAT
GGTGGCATTTCAGCCTTACATCGTTCGCACCCAGTTGACGGCCGCGCTGGCCGACATCAGCCCTGGCAAGACGCTGGTGG
AGATCGTTGTCTATCAGGGGCGTCCTGTCAGTGAGGTTACGCCTCAACTTATCGGCGGCGCCCAGAACGCCCACTGCTCC
AGCGTCGAAGCCGAACTCAGCGATTCCGGTGTCGGCCACATCAGCTGCACCCTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACAG
GCTGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.763

100

0.481
  pilA Acinetobacter baumannii strain A118

42.336

100

0.43
  pilA Pseudomonas aeruginosa PAK

38.255

100

0.422
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.176

100

0.415
  comP Acinetobacter baylyi ADP1

34.932

100

0.378
  pilA2 Legionella pneumophila strain ERS1305867

35.507

100

0.363