Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RS401_RS21150 Genome accession   NZ_CP135601
Coordinates   4057185..4058228 (-) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus sp. SI2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4052185..4063228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS21105 (RS401_21105) - 4052612..4052812 (-) 201 WP_000106081.1 YqzE family protein -
  RS401_RS21110 (RS401_21110) aroK 4052851..4053348 (-) 498 WP_153576739.1 shikimate kinase AroK -
  RS401_RS21115 (RS401_21115) - 4053469..4054119 (-) 651 WP_000183879.1 2OG-Fe(II) oxygenase -
  RS401_RS21120 (RS401_21120) comGG 4054295..4054666 (-) 372 WP_001231193.1 competence type IV pilus minor pilin ComGG -
  RS401_RS21125 (RS401_21125) comGF 4054663..4055133 (-) 471 WP_000923093.1 competence type IV pilus minor pilin ComGF -
  RS401_RS21130 (RS401_21130) comGE 4055103..4055405 (-) 303 WP_000229990.1 competence type IV pilus minor pilin ComGE -
  RS401_RS21135 (RS401_21135) comGD 4055398..4055853 (-) 456 WP_000810395.1 comG operon protein ComGD -
  RS401_RS21140 (RS401_21140) comGC 4055850..4056149 (-) 300 WP_001178696.1 comG operon protein ComGC -
  RS401_RS21145 (RS401_21145) comGB 4056161..4057192 (-) 1032 WP_000471911.1 comG operon protein ComGB -
  RS401_RS21150 (RS401_21150) comGA 4057185..4058228 (-) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  RS401_RS21155 (RS401_21155) - 4058434..4059129 (+) 696 WP_000434117.1 metalloregulator ArsR/SmtB family transcription factor -
  RS401_RS21160 (RS401_21160) - 4059255..4059497 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  RS401_RS21165 (RS401_21165) - 4059605..4060999 (+) 1395 WP_001094329.1 L-cystine transporter -
  RS401_RS21170 (RS401_21170) - 4061174..4061581 (-) 408 WP_017560026.1 hypothetical protein -
  RS401_RS21175 (RS401_21175) - 4061669..4061884 (-) 216 WP_001008320.1 DUF3912 family protein -
  RS401_RS21180 (RS401_21180) - 4062138..4062449 (+) 312 WP_001093243.1 hypothetical protein -
  RS401_RS21185 (RS401_21185) - 4062486..4062974 (-) 489 WP_000764252.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=887121 RS401_RS21150 WP_001013200.1 4057185..4058228(-) (comGA) [Bacillus sp. SI2]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=887121 RS401_RS21150 WP_001013200.1 4057185..4058228(-) (comGA) [Bacillus sp. SI2]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATATTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCAGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366