Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RSK81_RS02255 Genome accession   NZ_CP135591
Coordinates   433332..435317 (+) Length   661 a.a.
NCBI ID   WP_315687322.1    Uniprot ID   A0AA96SLP7
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 428332..440317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02245 (RSK81_02245) amiA 428998..430953 (+) 1956 WP_315687318.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02250 (RSK81_02250) amiA3 431129..433099 (+) 1971 WP_315687320.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  RSK81_RS02270 (RSK81_02270) amiE 437813..438880 (+) 1068 WP_002901221.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS02275 (RSK81_02275) amiF 438891..439817 (+) 927 WP_315687328.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73593.64 Da        Isoelectric Point: 4.6663

>NTDB_id=887014 RSK81_RS02255 WP_315687322.1 433332..435317(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKQSKVLALAGVTLLAAGFLAACSGSKPNTKSGSSDSSNTFNYIYETDPENLNYLTSSKAATTDLTANVIDGLLENDQYG
NLVPSMAEEWTVSPDGKTYTYKLRKDAKWYTSEGEEYADVTAEDFVTGLKYAADNKSETIYLVQDSVKGLKDYISGKIDF
SEVGIKAVDDHTVEYTLNEPESFWNSKTTMGILYPVNKDFLKNQGDKFAQATDPTSLLYNGPFLLKSLTSKSEIQFEKNP
NYWDKENVHVDAVKLSFYDGQDQGKLAEQFSQGALTTARLFPTSATYEKVEKDFKDNIVYTPQDASTFLVGTNIDRQSYN
HTAKTSEAQKTSTKKALLNKDFRQALTFAFNRESYASQINGKDGADKLLRNLYIPPTFVQAGDKSFGDLVKEKVVTYGDE
WKDVDFSDGQDGFYNENKAKAEFEKAKEALKADGVEFPIHLDIPVDQTATSKVQRVQSLKQSIEKTLGKDNVVIDVHQLS
KDEVTNITLFAPSAAEEDWDISDNVGWTPDYQDPSTYLDVIKPGGENTKTFLGFDGTDNAAAKQVGLDEYTKLVEEAGAE
KQDLNKRYEKYAAAQAWLTDSALLIPVTSRTGRPTLTKVVPFSAPFAWSGAKAREAASYKYMKLQDEPVTTKDYNNAQEK
WNKERAESNKKAQEELADHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=887014 RSK81_RS02255 WP_315687322.1 433332..435317(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAACAAAGCAAAGTCCTTGCGCTAGCAGGAGTTACTCTTCTTGCAGCTGGCTTTCTTGCTGCTTGCTCTGGCTCTAA
GCCAAACACAAAGTCAGGCAGCTCAGACTCTTCAAACACCTTTAATTATATCTACGAGACAGATCCTGAAAACTTGAACT
ATCTCACTTCAAGTAAAGCTGCTACAACAGACTTGACTGCCAATGTTATTGACGGTCTTTTAGAAAACGACCAATATGGA
AACTTGGTTCCTTCAATGGCAGAGGAATGGACTGTATCACCAGATGGGAAAACCTATACTTATAAGCTTCGCAAAGACGC
TAAGTGGTATACTTCCGAAGGTGAAGAGTACGCAGATGTTACAGCAGAAGACTTTGTTACAGGTCTTAAGTATGCGGCAG
ACAATAAATCTGAAACAATCTACTTGGTTCAGGATTCTGTCAAAGGGCTTAAGGACTATATTTCTGGCAAGATTGATTTC
TCAGAAGTAGGGATCAAAGCAGTCGATGATCATACCGTTGAGTATACTCTTAATGAGCCAGAAAGCTTCTGGAATTCTAA
GACTACAATGGGAATTCTCTACCCAGTAAACAAAGACTTTTTAAAAAACCAAGGTGATAAGTTCGCTCAAGCAACCGATC
CAACAAGCTTGCTTTATAACGGGCCTTTCTTGCTTAAATCATTGACTTCAAAATCTGAAATCCAATTTGAGAAGAATCCT
AATTATTGGGACAAAGAAAATGTTCACGTAGATGCAGTTAAACTCTCTTTCTATGATGGACAAGATCAAGGGAAACTAGC
TGAGCAGTTCAGTCAAGGTGCTCTGACAACAGCCAGACTCTTCCCGACTAGTGCGACTTATGAAAAGGTTGAAAAAGACT
TTAAAGATAATATCGTTTATACACCTCAAGATGCCTCAACTTTCTTAGTAGGTACAAACATTGATCGTCAGTCGTACAAC
CATACGGCTAAGACATCAGAAGCTCAAAAAACTTCAACTAAGAAAGCCTTGCTTAACAAGGACTTCCGTCAGGCTTTGAC
CTTTGCCTTCAATCGTGAGTCCTATGCATCTCAGATTAATGGTAAGGACGGAGCAGACAAACTTCTTCGTAACCTTTACA
TCCCACCTACATTTGTGCAGGCTGGTGACAAGTCCTTCGGTGACCTAGTTAAGGAAAAAGTCGTAACCTATGGTGACGAA
TGGAAAGATGTGGACTTCTCAGATGGCCAAGATGGATTCTATAACGAGAACAAAGCAAAGGCTGAATTTGAAAAAGCAAA
AGAAGCTTTGAAAGCCGATGGCGTAGAATTCCCAATCCATCTGGACATTCCGGTTGATCAAACAGCTACTTCTAAAGTAC
AACGTGTTCAATCCCTCAAGCAGTCTATTGAAAAGACCTTAGGAAAAGATAATGTTGTGATTGATGTTCACCAATTGTCT
AAAGATGAAGTAACTAACATTACCTTGTTTGCACCTTCTGCTGCTGAAGAAGACTGGGATATTTCAGACAATGTCGGCTG
GACTCCGGACTATCAAGATCCATCTACTTATCTAGATGTCATCAAACCTGGTGGTGAAAACACCAAGACCTTCTTAGGAT
TTGACGGCACCGATAATGCTGCAGCAAAACAAGTTGGTTTGGATGAATATACCAAACTAGTTGAAGAAGCGGGTGCAGAA
AAGCAAGATTTGAACAAGCGTTATGAAAAATATGCGGCTGCTCAGGCTTGGCTGACTGATAGTGCTTTGTTGATTCCGGT
AACTTCTAGAACAGGCCGTCCAACCTTGACTAAGGTAGTGCCTTTCTCAGCACCGTTTGCTTGGTCTGGTGCTAAGGCGC
GTGAAGCGGCAAGTTATAAGTACATGAAATTGCAGGATGAGCCTGTAACGACAAAAGATTATAATAACGCTCAGGAAAAA
TGGAATAAAGAACGTGCGGAATCTAATAAAAAAGCTCAAGAAGAATTAGCAGACCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

59.94

100

0.602
  amiA3 Streptococcus thermophilus LMD-9

59.789

100

0.601
  amiA3 Streptococcus thermophilus LMG 18311

59.488

100

0.598