Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RSK81_RS02270 Genome accession   NZ_CP135591
Coordinates   437813..438880 (+) Length   355 a.a.
NCBI ID   WP_002901221.1    Uniprot ID   A0A3R9GSS4
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 432813..443880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  RSK81_RS02270 (RSK81_02270) amiE 437813..438880 (+) 1068 WP_002901221.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS02275 (RSK81_02275) amiF 438891..439817 (+) 927 WP_315687328.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39487.22 Da        Isoelectric Point: 4.8177

>NTDB_id=887017 RSK81_RS02270 WP_002901221.1 437813..438880(+) (amiE) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAKGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFKVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=887017 RSK81_RS02270 WP_002901221.1 437813..438880(+) (amiE) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGCGTCTTAACCGC
CATTCGCGGTGTCTCTCTGGACTTGATTGAAGGCGAAGTGCTGGCTATTGTTGGTGAATCAGGTTCAGGAAAGTCTGTAT
TAACAAAGACCTTTACTGGTATGTTAGAAGAAAATGGCCGTGTAGCTAAAGGAACTATTGATTACCGCGGTAAAGATTTG
ACAACTCTTCGTAGTAATAAGGATTGGGAGCCGATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCCATTAATACGATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGACTATATGAGTAAGGTCGGGATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCTTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAGATTATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGTACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTATCCAGCTTACCTCAGTTGGC
AGATGCGAATGGTGCCCTCTACTCGATTCCTGGTACTCCGCCGTCTCTCTATTCACCGATCAAAGGGGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCAATTGACTTTGAAGAAGAAGCACCGGCTTTCAAGGTCTCAGATACTCATTGGGCTAAG
ACTTGGTTACTGCACGAAGATGCGCCTAAGGTTGATAAACCAGAGATTATCGAAAACCTACATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9GSS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.31

96.338

0.552