Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RSK81_RS02265 Genome accession   NZ_CP135591
Coordinates   436878..437804 (+) Length   308 a.a.
NCBI ID   WP_002898857.1    Uniprot ID   A0A2X4CY31
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 431878..442804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  RSK81_RS02270 (RSK81_02270) amiE 437813..438880 (+) 1068 WP_002901221.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS02275 (RSK81_02275) amiF 438891..439817 (+) 927 WP_315687328.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34624.69 Da        Isoelectric Point: 9.8486

>NTDB_id=887016 RSK81_RS02265 WP_002898857.1 436878..437804(+) (amiD) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPSAQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEIYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=887016 RSK81_RS02265 WP_002898857.1 436878..437804(+) (amiD) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
CTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCTACCATTACCATGTTGGGGATTCTGATTGCCATTA
TTCTCATGAGCTTCATTTATCCTATGTTTTCAAACTTCGACTTTAATGATGTGAGCAAGGTAAATGACTTTAGCATGCGT
TATATCAAGCCAAGTGCCCAGTACTGGTTTGGAACAGATAGTAATGGTAAGTCTCTCTTTGACGGTGTTTGGTTTGGTGC
CCGTAACTCTATTCTCATTTCGATTATTGCGACGGTTATTAATCTGGCTATCGGAGTTATCATTGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGTGTCATGATGGAAATCTACAATATCATTTCAAATATCCCAGCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCTGGTTTCTGGAATCTTATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
TATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAATACAACCTTGCCTCTCGTACTCTTGGTACACCAACTCTCAAGA
TTGTTACGAAGAACATTATGCCGCAGTTGGTATCTGTTATCGTGACCACCACTTCACAAATGTTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGATTAGGACTTCCTGTAACAGTGCCAAGTTTGGGACGCTTGATTTCAGATTATTC
ACAAAACGTGACGACGAATGCCTACCTCTTTTGGATTCCACTCACAACTCTGATTTTGGTATCCCTTACCTTCTTCGTAG
TTGGTCAAAACTTAGCTGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4CY31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.364

100

0.864
  amiD Streptococcus thermophilus LMG 18311

84.416

100

0.844
  amiD Streptococcus thermophilus LMD-9

84.416

100

0.844