Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RSK81_RS02275 Genome accession   NZ_CP135591
Coordinates   438891..439817 (+) Length   308 a.a.
NCBI ID   WP_315687328.1    Uniprot ID   A0AA96NST1
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 433891..444817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  RSK81_RS02270 (RSK81_02270) amiE 437813..438880 (+) 1068 WP_002901221.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS02275 (RSK81_02275) amiF 438891..439817 (+) 927 WP_315687328.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34845.86 Da        Isoelectric Point: 5.9499

>NTDB_id=887018 RSK81_RS02275 WP_315687328.1 438891..439817(+) (amiF) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDIFYEGKKINGKKSKA
EEADLIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFDSEEDRQRKVKDIINEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQSLLSAVPIPDPILERKKVLKVYDPEQHDYSVDKPEMAEIRPGHYVWANKAELEKYKQEQK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=887018 RSK81_RS02275 WP_315687328.1 438891..439817(+) (amiF) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGCGAAGGAAGTAAGAAATTTGTAGCAGTAAAAAA
CGCAAATTTCTTCATCAATAAGGGAGAAACTTTCTCTCTTGTAGGAGAATCAGGCTCTGGTAAGACTACTATTGGTCGAG
CTATTATTGGCCTTAATGATACCAGTGCAGGCGATATCTTCTATGAAGGCAAAAAGATTAATGGTAAAAAGTCAAAAGCA
GAAGAAGCGGACTTGATTCGCAAGATTCAGATGATTTTCCAAGACCCAGCAGCTAGCCTGAATGAACGTGCAACGGTTGA
CTATATCATATCTGAGGGTCTCTATAATTACCATTTGTTTGATAGCGAAGAAGACCGTCAAAGAAAAGTCAAAGATATCA
TCAATGAAGTTGGTTTGTTGGCTGAGCATTTAACTCGCTATCCTCACGAATTCTCTGGTGGACAGCGTCAACGGATTGGG
ATTGCTCGTGCTTTGGTCATGCAACCAGACTTCGTGATTGCTGATGAGCCGATTTCCGCCTTGGACGTGTCTGTCCGAGC
ACAGGTCTTGAATCTTTTGAAAAAATTTCAAAAAGAGCTTGGCTTGACCTACCTGTTTATTGCCCATGACCTTTCGGTAG
TTCGTTTTATTTCTGATCGTATCGCCGTGATTTACAAAGGTGTCATTGTAGAGGTGGCAGAGACAGAGGAGCTATTCAAC
AATCCTGTCCATCCTTACACACAATCCCTGCTCTCAGCTGTACCAATTCCAGACCCAATCTTGGAGCGTAAAAAAGTGTT
GAAGGTCTATGATCCTGAACAGCACGATTATTCAGTTGATAAACCAGAAATGGCAGAGATTCGTCCAGGACATTATGTCT
GGGCTAATAAAGCTGAACTCGAAAAGTATAAACAAGAACAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.993

99.675

0.857
  amiF Streptococcus thermophilus LMG 18311

85.342

99.675

0.851
  amiF Streptococcus thermophilus LMD-9

85.016

99.675

0.847