Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RSK81_RS02260 Genome accession   NZ_CP135591
Coordinates   435382..436878 (+) Length   498 a.a.
NCBI ID   WP_315687325.1    Uniprot ID   A0AA96SNN4
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 430382..441878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02250 (RSK81_02250) amiA3 431129..433099 (+) 1971 WP_315687320.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  RSK81_RS02270 (RSK81_02270) amiE 437813..438880 (+) 1068 WP_002901221.1 ABC transporter ATP-binding protein Regulator
  RSK81_RS02275 (RSK81_02275) amiF 438891..439817 (+) 927 WP_315687328.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55828.67 Da        Isoelectric Point: 9.7913

>NTDB_id=887015 RSK81_RS02260 WP_315687325.1 435382..436878(+) (amiC) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKKYVFMRILRSIVSIFLVTTLTYAIIYTMVPRRLIFKQDPNYNKIATNKDKKTNYENTIFERMGYIDYYDTKELQEKAS
KEDSSVTTEATEANKKIYQKYIDKLGNGWKLQKFPLSGEFYAVREVPVYERVFEFYANLIQIDHPNVIQDEENPNLERYI
RFENDPSVGWSLVGSGTKHKYLLYFNGQFPFVHQNFITFNLGNSYPTYANIPVLQVITQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKTPSKADSQDIAKFGKGDAYTATQSNYQNPSMITSSAIIGLIGVALSYLIAIPLGSYMARLKNTWFDSISTAG
LTFMMSLPTIALVYIVRLAGSAVGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPASIVGVIAGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTVLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=887015 RSK81_RS02260 WP_315687325.1 435382..436878(+) (amiC) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAAAAATATGTTTTTATGCGTATCTTACGCTCAATTGTGTCGATTTTCTTGGTGACGACCCTGACTTATGCCATTAT
CTATACTATGGTGCCAAGAAGGTTGATTTTCAAGCAGGATCCTAACTATAATAAGATAGCGACCAATAAAGATAAAAAGA
CTAACTATGAAAACACCATCTTTGAGCGGATGGGCTACATTGACTATTATGATACAAAGGAACTGCAGGAGAAAGCCAGC
AAGGAAGATTCTTCTGTTACCACAGAAGCTACAGAAGCAAACAAGAAGATTTATCAGAAGTATATTGATAAACTTGGCAA
CGGCTGGAAATTGCAGAAATTCCCACTGAGCGGAGAATTCTACGCTGTACGTGAAGTACCTGTGTATGAACGTGTCTTTG
AGTTCTATGCTAATTTGATTCAAATCGACCATCCAAATGTTATCCAAGATGAGGAAAATCCAAACCTAGAGCGTTATATC
CGGTTTGAAAATGATCCTTCTGTTGGCTGGTCTCTTGTGGGTTCTGGTACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTTCCATTTGTCCACCAGAACTTTATCACCTTTAATTTAGGTAATTCTTATCCAACCTATGCCAATATCCCTGTTC
TGCAGGTTATTACGCAAGGACAAGGACAAACTAAGTCTTCCGAAGTTCAATTCCCAACAGGTAAAAAGACATCGTCTGTA
AATATCTATTCTCGTACTTACAAGACGCCAAGCAAAGCTGACTCACAGGATATTGCTAAGTTTGGTAAGGGAGATGCCTA
TACAGCGACTCAAAGCAACTATCAAAATCCGTCCATGATTACCAGCTCAGCCATTATCGGTTTGATTGGTGTGGCTCTGT
CTTATCTGATTGCTATTCCACTCGGATCCTACATGGCTCGACTCAAGAATACATGGTTTGATAGCATTTCTACAGCGGGC
TTGACCTTTATGATGTCACTGCCAACCATCGCCTTGGTCTACATTGTCCGTTTGGCTGGCTCTGCTGTTGGTCTTCCAGA
CTCCTTCCCAATCTTGGGAGCGGGAGATTGGCGTTCTTATGTCCTTCCAGCTGTTATTTTAGGGCTTTTGAGTGCTCCTT
GGACAGCAGTTTGGATTCGCCGGTATATGATTGACCTTCAGTCTCAGGACTTTGTCCGTTTTGCCCGTGCGAAGGGTCTC
TCTGAAAAAGAAATTTCTAACAAGCACATCTTTAAAAACGCTATGGTGCCGCTGGTATCTAGTATCCCAGCTTCTATCGT
TGGTGTTATTGCAGGTGCGACTCTGACAGAAACTGTCTTTGCTTTCCCTGGTATGGGTAAGATGCTGATTGATTCTGTTA
AGGCATCCAATAACTCTATGGTTGTTGGTCTTGTATTCATCTTCACATGTCTGTCTATCTTTGCTCTCTTATTGGGTGAC
ATTCTGATGACTGTACTGGACCCACGTATCAAGTTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

75.904

100

0.759
  amiC Streptococcus thermophilus LMD-9

75.703

100

0.757
  amiC Streptococcus thermophilus LMG 18311

75.703

100

0.757