Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RSK81_RS02245 Genome accession   NZ_CP135591
Coordinates   428998..430953 (+) Length   651 a.a.
NCBI ID   WP_315687318.1    Uniprot ID   A0AA96NNI1
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 423998..435953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02225 (RSK81_02225) - 424210..425442 (+) 1233 WP_101771967.1 cysteine desulfurase -
  RSK81_RS02230 (RSK81_02230) sufU 425429..425866 (+) 438 WP_002902442.1 Fe-S cluster assembly sulfur transfer protein SufU -
  RSK81_RS02235 (RSK81_02235) sufB 425884..427296 (+) 1413 WP_002893631.1 Fe-S cluster assembly protein SufB -
  RSK81_RS02240 (RSK81_02240) pbp3 427437..428705 (-) 1269 WP_315687315.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RSK81_RS02245 (RSK81_02245) amiA 428998..430953 (+) 1956 WP_315687318.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02250 (RSK81_02250) amiA3 431129..433099 (+) 1971 WP_315687320.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72288.98 Da        Isoelectric Point: 4.5825

>NTDB_id=887012 RSK81_RS02245 WP_315687318.1 428998..430953(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKKSKWLAITGLTVVSTLILAACGSSSASNTYSYVYLSDPDTLDYVNSNRATTSDVITNLVDGLLENDKYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVAGLKHAADENSEALPIVQSSIKGLDAYVKGESKDFSTVGVKAV
DDHTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
VENIKLTYFDGSDQESLIRNFSDGAYSQARLYPTSSNYASVEKQYKDNIIYTPQNSTSFYFAFNLNRKTYNHSSKTSDAQ
KASTTAAIQNKDFRQAINFAFDRTSFGAQMNGKDGATKLIRSLLVPPSFVQVDGKDFSDVVESQLSSYGDEWNGIKLADA
QDSIYNADKAKAEFAKAKETLQAEGVEFPIHIDVPVDQSDKVLVQRTNSFKQSVESALGQENVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDAADNIGIEKGKNADVANKVGLNEYKALLDEADQEKQDTDARYT
KYAAAQAWLTDSSIVIPSVSGGGSPVVQKVVPFTKSYSYVGIKGDAYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEELEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=887012 RSK81_RS02245 WP_315687318.1 428998..430953(+) (amiA) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAAAAATCTAAATGGTTGGCCATTACTGGACTGACAGTCGTGTCAACACTAATCTTAGCTGCTTGTGGAAGCTCTAG
TGCCAGTAATACCTATTCTTATGTCTATTTGAGTGATCCTGATACTTTGGACTATGTCAATTCAAATCGAGCTACTACGT
CCGATGTTATTACAAACTTGGTGGACGGCCTTTTAGAAAATGATAAATACGGCAATTTGGTTCCATCTATTGCGGAAGAC
TGGACTGTTTCAAAGGATGGTTTGACCTATACCTATAAGCTTCGTAAAGATGCTAAGTGGTACACATCAGATGGTGAAGA
ATATGCAGAGGTTAAAGCACAAGACTTTGTAGCAGGTTTGAAGCACGCGGCAGATGAAAATTCTGAAGCTCTTCCTATCG
TCCAAAGCTCTATCAAAGGCTTGGATGCCTATGTCAAAGGAGAGTCTAAAGACTTCTCAACAGTTGGAGTAAAAGCAGTT
GATGACCACACGGTCGAATACACGCTCAACCAGCCAGAAAGCTACTGGAACTCTAAGACGACCATGGGGATTCTGTTCCC
CATCAATGAGGATTTCTTGAAGTCACAAGGCAAAGATTTTGGTACCGTAAAACCTTCTTCCATTCTTTATAACGGACCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAGAACTATTGGGATAAGGACAATGTCAAG
GTTGAAAATATAAAACTGACTTATTTTGATGGTTCGGATCAGGAATCCTTGATCCGCAACTTCTCAGACGGGGCTTATTC
TCAAGCACGGCTTTACCCTACGAGCTCTAACTATGCTTCTGTAGAAAAGCAGTACAAAGACAATATTATTTACACACCAC
AGAATTCAACTAGTTTCTATTTTGCTTTCAATCTGAATCGTAAGACTTATAATCATTCGTCTAAGACATCAGATGCTCAA
AAGGCATCAACTACAGCTGCTATTCAAAATAAAGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGGACATCTTTTGG
AGCTCAGATGAATGGTAAAGATGGAGCGACTAAACTCATCCGTAGCTTGCTTGTTCCTCCTAGCTTTGTGCAGGTGGACG
GTAAGGACTTCTCTGATGTAGTAGAGAGCCAACTTTCATCTTATGGAGATGAGTGGAATGGCATTAAGCTGGCGGATGCT
CAGGATAGTATCTACAATGCTGATAAAGCCAAGGCGGAATTTGCCAAGGCAAAAGAAACCTTGCAAGCTGAAGGTGTAGA
ATTCCCAATCCATATTGACGTCCCTGTCGATCAGTCTGACAAGGTTTTGGTACAACGGACGAACTCCTTCAAACAGTCTG
TCGAATCAGCGCTTGGCCAAGAAAATGTCGTTATTGATGTTCAGCAAATGTCAACAGATGACTTTGATAATTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAAGACTACGATCTCAACATGTCTGGCTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATCTTTAACCCTGAAACAGGTGATGCTGCAGATAATATTGGTATAGAAAAAGGGAAAAATGCTGATGTGGCAA
ATAAGGTTGGCTTGAATGAATACAAGGCTTTGCTGGATGAAGCTGATCAAGAAAAACAAGATACAGATGCTCGTTACACC
AAGTACGCAGCAGCTCAGGCTTGGTTGACGGATAGCTCCATTGTTATTCCTAGTGTTTCTGGTGGTGGTTCACCAGTCGT
TCAGAAGGTTGTGCCATTTACCAAGTCTTACTCTTATGTCGGAATTAAAGGAGATGCCTATGTCTTTAAGAACATGGAGC
TCCAAAATGATATTGTGACAGCTAAAGACTATGAAGCAGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGAGCTAGAAAAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.534

100

0.581
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.568
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.565