Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RSK81_RS02250 Genome accession   NZ_CP135591
Coordinates   431129..433099 (+) Length   656 a.a.
NCBI ID   WP_315687320.1    Uniprot ID   A0AA96SKV9
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 426129..438099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS02240 (RSK81_02240) pbp3 427437..428705 (-) 1269 WP_315687315.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RSK81_RS02245 (RSK81_02245) amiA 428998..430953 (+) 1956 WP_315687318.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02250 (RSK81_02250) amiA3 431129..433099 (+) 1971 WP_315687320.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02255 (RSK81_02255) amiA 433332..435317 (+) 1986 WP_315687322.1 peptide ABC transporter substrate-binding protein Regulator
  RSK81_RS02260 (RSK81_02260) amiC 435382..436878 (+) 1497 WP_315687325.1 ABC transporter permease Regulator
  RSK81_RS02265 (RSK81_02265) amiD 436878..437804 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72605.20 Da        Isoelectric Point: 4.5400

>NTDB_id=887013 RSK81_RS02250 WP_315687320.1 431129..433099(+) (amiA3) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MKTSKLAAAAGLVILSAGILAACSFGGSNSSGKNYSYVYTADPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFFVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGFYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIEANLGSDNVVIDIQQMTDDELN
NITYFATSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDGYFGFDPGTDNAAAKEAGFEEYDKLLEDAAAENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQKELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=887013 RSK81_RS02250 WP_315687320.1 431129..433099(+) (amiA3) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGAATTTTGGCTGCCTGTTCGTTTGGTGG
CTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACGGCAGATCCAGATACGCTGGATTATACTGTGTCTAATAAGC
GGGCAACCAATGAGATAATGGCTAATGTAGTAGATGGTTTGCTAGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACCGTTTCAAAGGATGGTCTGACCTATACTTATAAGCTTCGTGAGGGAGTGAAATGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCTGCAGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGACGACTATGTTAATGGTAAAATAACTGACTTCTCCCAAGTTGGTGTT
AAGGCGGTGGATGATTCTACTGTTCAATACACTTTGAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGGAT
TCTTTTCCCAATTAATGAAGAATTTCTGAAATCAAAAGGTGACAAATTTGCTCAGGGGACAGATCCAACCAGTGTCCTCT
ATAACGGTCCGTTTATCTTGAAATCTATCACTTCGAAATCTCAAATTAGCTTAGAGAAGAATCCAAACTATTGGGATAAG
GAAAAGGTGAAAATTGACACTGTCAAATTCTCTTACTACGATGGTCAAGATACAGAATCTCTGGTGCGTGGCTTTTCTGA
TGGCAACTACACCATTGCTCGTCTTTTCCCAAATAGCTCCAACTTTGCCAGTGTAAAGAAACAGTATGGCGACAATATCG
TCTACACGCCTCAAGGCTCAGGAACCTTCTTTGTTACAACTAATATTGATCGTCAGTCTTACGAGCATACCTCCAAGACA
ACGGATGCACAGAAATCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGTCAGGCTCTGCTTTTTGCCTTTGACCG
TACTGCCTATTCTGCCCAAACCAATGGCGAAGAAGCAGCAGATAAGCAGCTTCGCAACACCTTTGTTCCGCCAACCTTTG
TTCAAGCTAATGGTAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTAGCTAGCTACGGTGATGAATGGAAGGGAGTCAAA
TTAGACGACGCTCAGGATGGTTTTTATAATCCAGAAAAAGCCAAGGCAGAATTTGCCAAAGCTAAAGAAGCGCTGCAAGC
AGAAGGAGTGGAATTCCCAATTCATCTGGACATTCCGGTCAGCTCAGCAGATACCAATGGCGTTAAGAGCGTTCAGTCAC
TGAAGCAGTCTATTGAAGCCAACCTTGGTTCTGACAATGTGGTGATTGACATTCAGCAGATGACAGATGATGAGTTGAAT
AACATCACCTACTTTGCGACCTCAGCATCTCAAGAAGACTGGGACTTGAATAATAATCTCGGCTGGAGCCCGGATTATAA
CGATCCATCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGACGGCTACTTTGGTTTTGACCCTGGCA
CAGATAATGCAGCAGCTAAAGAGGCCGGCTTTGAAGAGTATGACAAGCTCTTGGAAGATGCAGCTGCGGAAAACGAGGAT
ATTAACAAACGTTACGAAAAGTATGCTGCAGCTCAGGCTTGGCTGACAGACAGTGCTCTGTTGATGCCAGCTTGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCATTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGACAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAGTCCAACAAAAAAGCTCAAAAAGAACTCGCAGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.636

100

0.599
  amiA3 Streptococcus thermophilus LMG 18311

58.877

100

0.591
  amiA Streptococcus salivarius strain HSISS4

58.663

100

0.588