Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RNT40_RS05490 Genome accession   NZ_CP135236
Coordinates   1209955..1211172 (-) Length   405 a.a.
NCBI ID   WP_047326532.1    Uniprot ID   A0AAX3SJF5
Organism   Delftia tsuruhatensis strain HA60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204955..1216172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT40_RS05460 (RNT40_05460) - 1205786..1206742 (+) 957 WP_126310904.1 ATP-binding protein -
  RNT40_RS05465 (RNT40_05465) - 1206793..1207299 (+) 507 WP_126310903.1 NUDIX domain-containing protein -
  RNT40_RS05470 (RNT40_05470) - 1207310..1207564 (-) 255 WP_016451023.1 DNA gyrase inhibitor YacG -
  RNT40_RS05475 (RNT40_05475) zapD 1207564..1208319 (-) 756 WP_016445607.1 cell division protein ZapD -
  RNT40_RS05480 (RNT40_05480) coaE 1208409..1209047 (-) 639 WP_016445608.1 dephospho-CoA kinase -
  RNT40_RS05485 (RNT40_05485) pilD 1209062..1209955 (-) 894 WP_016445609.1 A24 family peptidase Machinery gene
  RNT40_RS05490 (RNT40_05490) pilC 1209955..1211172 (-) 1218 WP_047326532.1 type II secretion system F family protein Machinery gene
  RNT40_RS05495 (RNT40_05495) pilB 1211211..1212953 (-) 1743 WP_034364744.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RNT40_RS05505 (RNT40_05505) - 1213190..1214119 (-) 930 WP_043789750.1 polyprenyl synthetase family protein -
  RNT40_RS05510 (RNT40_05510) rplU 1214350..1214661 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  RNT40_RS05515 (RNT40_05515) rpmA 1214677..1214934 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44398.25 Da        Isoelectric Point: 9.3922

>NTDB_id=886251 RNT40_RS05490 WP_047326532.1 1209955..1211172(-) (pilC) [Delftia tsuruhatensis strain HA60]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFSSFGADLPAPTLLVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=886251 RNT40_RS05490 WP_047326532.1 1209955..1211172(-) (pilC) [Delftia tsuruhatensis strain HA60]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATTGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTGTTCAGTTCGTTCGGCGCAGACCTGCCGGCGCCGACGCTTTTGG
TAATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTATCGACCATGTTTGCCGCGGGTGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCTATGACCAATGCCAATGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCGGCCGATTTCTATGAGGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

38.806

99.259

0.385
  pilC Thermus thermophilus HB27

37

98.765

0.365