Detailed information NTG0886250

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RNT40_RS05485
• Genome accession: NZ_CP135236
• Coordinates: 1209062..1209955 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia tsuruhatensis strain HA60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1204062..1214955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RNT40_RS05455 (RNT40_05455)	argJ	1204388..1205620 (+)	1233	WP_016451021.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
RNT40_RS05460 (RNT40_05460)	-	1205786..1206742 (+)	957	WP_126310904.1	ATP-binding protein	-
RNT40_RS05465 (RNT40_05465)	-	1206793..1207299 (+)	507	WP_126310903.1	NUDIX domain-containing protein	-
RNT40_RS05470 (RNT40_05470)	-	1207310..1207564 (-)	255	WP_016451023.1	DNA gyrase inhibitor YacG	-
RNT40_RS05475 (RNT40_05475)	zapD	1207564..1208319 (-)	756	WP_016445607.1	cell division protein ZapD	-
RNT40_RS05480 (RNT40_05480)	coaE	1208409..1209047 (-)	639	WP_016445608.1	dephospho-CoA kinase	-
RNT40_RS05485 (RNT40_05485)	pilD	1209062..1209955 (-)	894	WP_016445609.1	A24 family peptidase	Machinery gene
RNT40_RS05490 (RNT40_05490)	pilC	1209955..1211172 (-)	1218	WP_047326532.1	type II secretion system F family protein	Machinery gene
RNT40_RS05495 (RNT40_05495)	pilB	1211211..1212953 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RNT40_RS05505 (RNT40_05505)	-	1213190..1214119 (-)	930	WP_043789750.1	polyprenyl synthetase family protein	-
RNT40_RS05510 (RNT40_05510)	rplU	1214350..1214661 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
RNT40_RS05515 (RNT40_05515)	rpmA	1214677..1214934 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=886250 RNT40_RS05485 WP_016445609.1 1209062..1209955(-) (pilD) [Delftia tsuruhatensis strain HA60]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=886250 RNT40_RS05485 WP_016445609.1 1209062..1209955(-) (pilD) [Delftia tsuruhatensis strain HA60]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
ACATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGTCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCTACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407