Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   RMQ61_RS03760 Genome accession   NZ_CP135090
Coordinates   735814..736476 (+) Length   220 a.a.
NCBI ID   WP_313926526.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730814..741476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS03740 (RMQ61_03745) - 731532..732461 (-) 930 WP_313926523.1 ABC transporter substrate-binding protein -
  RMQ61_RS03745 (RMQ61_03750) - 732474..733259 (-) 786 WP_313926524.1 ABC transporter ATP-binding protein -
  RMQ61_RS03750 (RMQ61_03755) - 733411..734856 (-) 1446 WP_313926525.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RMQ61_RS03755 (RMQ61_03760) - 735001..735747 (+) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RMQ61_RS03760 (RMQ61_03765) comEA/celA/cilE 735814..736476 (+) 663 WP_313926526.1 helix-hairpin-helix domain-containing protein Machinery gene
  RMQ61_RS03765 (RMQ61_03770) comEC/celB 736460..738697 (+) 2238 WP_313926527.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMQ61_RS03770 (RMQ61_03775) holA 738793..739824 (+) 1032 WP_313921216.1 DNA polymerase III subunit delta -
  RMQ61_RS03775 (RMQ61_03780) sodA 739937..740542 (+) 606 WP_013730459.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23489.16 Da        Isoelectric Point: 4.0498

>NTDB_id=884978 RMQ61_RS03760 WP_313926526.1 735814..736476(+) (comEA/celA/cilE) [Streptococcus suis strain ID48908]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTEQTSSSSDLVEENNTEVSEEPSQLVVDVK
GAVAKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTTSSAMPQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=884978 RMQ61_RS03760 WP_313926526.1 735814..736476(+) (comEA/celA/cilE) [Streptococcus suis strain ID48908]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGTCAACCAGCCAAGTCTGATCAGACAGGCCTGACAGATTTTCCGCAGACCGAACAAA
CTTCTAGCAGCTCTGACTTGGTCGAGGAAAACAATACAGAAGTAAGTGAGGAACCCAGCCAGCTGGTCGTTGATGTCAAA
GGAGCAGTAGCAAAGCCGGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGTGGCTT
GACCAGTCAGGCAGATCCCAAATCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTACCAGCTCTGCTATGCCCCAAGAAGAAAAAAACACCAGTCTAGTCAAT
CTCAATACGGCGACCGAGGCTGACTTGCAGACCATTTCTGGTATTGGTGCCAAGCGAGCGACGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTGTCGGGCATCGGCGACAAGACTATGGAAAGCATCC
GGCCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae Rx1

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae D39

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae R6

48.402

99.545

0.482
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.489

99.545

0.473
  comEA/celA/cilE Streptococcus mitis SK321

46.396

100

0.468
  comEA Streptococcus thermophilus LMD-9

60.127

71.818

0.432
  comEA Lactococcus lactis subsp. cremoris KW2

38.914

100

0.391
  comEA Bacillus subtilis subsp. subtilis str. 168

39.336

95.909

0.377