Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   RMQ61_RS03765 Genome accession   NZ_CP135090
Coordinates   736460..738697 (+) Length   745 a.a.
NCBI ID   WP_313926527.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731460..743697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS03740 (RMQ61_03745) - 731532..732461 (-) 930 WP_313926523.1 ABC transporter substrate-binding protein -
  RMQ61_RS03745 (RMQ61_03750) - 732474..733259 (-) 786 WP_313926524.1 ABC transporter ATP-binding protein -
  RMQ61_RS03750 (RMQ61_03755) - 733411..734856 (-) 1446 WP_313926525.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RMQ61_RS03755 (RMQ61_03760) - 735001..735747 (+) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RMQ61_RS03760 (RMQ61_03765) comEA/celA/cilE 735814..736476 (+) 663 WP_313926526.1 helix-hairpin-helix domain-containing protein Machinery gene
  RMQ61_RS03765 (RMQ61_03770) comEC/celB 736460..738697 (+) 2238 WP_313926527.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMQ61_RS03770 (RMQ61_03775) holA 738793..739824 (+) 1032 WP_313921216.1 DNA polymerase III subunit delta -
  RMQ61_RS03775 (RMQ61_03780) sodA 739937..740542 (+) 606 WP_013730459.1 superoxide dismutase SodA -
  RMQ61_RS03780 (RMQ61_03785) - 740806..742830 (+) 2025 WP_313926528.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84201.12 Da        Isoelectric Point: 7.6352

>NTDB_id=884979 RMQ61_RS03765 WP_313926527.1 736460..738697(+) (comEC/celB) [Streptococcus suis strain ID48908]
MSRLSKLPCQPIHLAILAVAAYFAVHSFSLLTMGLFSLLLAVFGFRQGKTVFIRTLPLLALFGLFFGCQKVQWERADRSA
PEQVTTVQVIPDTIEVNGDSLSFRGRADAQTYQVFYKLTSQEEQTYFQNLADLVQLEVEAEVSLPAGQRNFKGFDYQAYL
KTQGIYRTVKLTAIKKIVPVQSWNVFDWLSTWRRQALVYVKTNFPAPMSHYMTGLLFGDLDSEFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWMLLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPVVKMTWVNGFFVFMEKIIVWVADLGLRPWILGKPSELVLLLLLVSLFLLYDFHRRKKWLLGLSLVLALLFFITK
HPLENEVTVLDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGRIVVSPGSLTVPDFVATLKKINVPVHVVKVGDRLPIFDSYLEVLYPDGTGDGGNNDSIVLYGRLL
KTNFLFTGDLEQGELDLIETYSNLPVDVLKAGHHGSKGSSYPEFLDHIEAKIALVSAGENNRYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWKEWKIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=884979 RMQ61_RS03765 WP_313926527.1 736460..738697(+) (comEC/celB) [Streptococcus suis strain ID48908]
ATGTCACGGTTGAGTAAGCTCCCCTGCCAGCCCATCCACTTGGCCATCTTAGCAGTGGCGGCCTACTTTGCAGTCCATTC
TTTTTCCCTCTTGACAATGGGCTTGTTCAGTCTGTTACTAGCTGTCTTTGGATTTCGGCAAGGTAAGACAGTTTTCATCA
GAACGCTGCCGCTTCTAGCCCTGTTTGGACTGTTTTTCGGATGTCAGAAGGTCCAATGGGAGCGAGCAGATCGGTCAGCC
CCAGAGCAAGTAACGACTGTACAGGTCATTCCAGATACGATTGAAGTCAACGGGGACAGCCTGTCCTTTCGTGGTCGGGC
TGACGCACAAACCTATCAGGTTTTCTACAAATTAACCAGTCAGGAGGAGCAGACCTATTTTCAAAATCTGGCAGACCTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAGGGCTTTGACTATCAGGCCTATCTG
AAAACACAGGGCATCTATCGGACTGTCAAGCTAACGGCGATTAAGAAGATTGTCCCTGTCCAGTCTTGGAATGTTTTTGA
CTGGCTGTCAACTTGGCGGAGGCAGGCCTTGGTCTATGTCAAAACCAATTTTCCGGCTCCCATGAGCCACTACATGACAG
GGCTCTTGTTTGGGGACTTGGATAGTGAGTTTGACCAGATGAGTGACCTCTATTCTAGTTTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTTGGATTTTTCATCGATAAGTTTCGCTGGATGTTACTGCGTTTGGGCTTGACCAAGGAAAC
AGTGGATAAGTTACAAATTCCCTTTTCCCTTGTCTATGCGGGCTTGACAGGTTTTTCCGTGTCGGTGGTGCGATCTTTGG
TTCAGAAAATTCTGGGCAATATGGGCTTGCGGAAGTTGGATAACTTTGCGGTGACAGTCTTTGTCTGTCTGCTGATACTA
CCCCGATTTTTACTGACAGCTGGCGGTGTCTTGACCTTTACCTATGCTTTCTTGCTGACGGTTTTTGATTTTGAGGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAAAGTCTCAGTATTTCACTTGGGATTTTGCCAGTGCTTATGACCTATTTCTATG
CCTTTCAGCCTCTATCTATCCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTACTCTTGCCAGGTTTGTCAGTC
ATTTTTCTCCTGTCGCCAGTTGTCAAGATGACTTGGGTCAACGGATTTTTCGTCTTTATGGAGAAAATCATTGTCTGGGT
GGCTGATTTGGGATTGCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGGTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAGAAAGAAATGGCTTCTAGGACTGAGCTTGGTCCTCGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGCTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTAGGCGGACGAGTCGATTTCGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTCGGCAGGCAAATGCAG
AGCGGACTTTGATTCCCTATCTGCATAGTCGGGGTGTGGATAGGATTGATAGTTTAGTCCTGACCCACACCGATACGGAC
CATGTGGGCGATGTGCTGGAAGTGGCGAAGCAGGTCCAGATTGGCCGGATTGTCGTGTCGCCAGGAAGTCTGACGGTGCC
TGACTTTGTAGCAACTCTGAAAAAAATCAATGTGCCTGTCCATGTGGTAAAAGTGGGCGACCGCTTGCCGATTTTTGACT
CTTATCTGGAGGTCCTCTATCCAGATGGGACAGGTGACGGTGGTAATAATGACTCCATTGTCCTTTACGGTCGCTTGCTG
AAAACTAATTTTCTCTTTACAGGGGACTTGGAGCAGGGGGAGTTGGACTTGATAGAAACCTATTCTAACTTGCCTGTTGA
TGTCCTCAAAGCCGGTCACCACGGATCTAAAGGTTCTTCCTATCCTGAATTTTTAGACCATATCGAAGCCAAGATTGCCT
TGGTATCTGCTGGAGAAAACAATCGCTACAAGCATCCCCATCAAGAGACCTTGGACCGCTTTGACAGTCGGAATATCCAA
GTCTATCGTACCGACCAGCAAGGAGCTATTCGATTTAGAGGCTGGAAGGAGTGGAAGATTGAGACGGTGAGGGAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Domain of unknown function (DUF4131) (DUF4131)

(29-175)

Competence protein (Competence)

(215-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

53.992

99.195

0.536
  comEC/celB Streptococcus mitis NCTC 12261

52.901

99.463

0.526
  comEC/celB Streptococcus pneumoniae TIGR4

52.097

99.195

0.517
  comEC/celB Streptococcus pneumoniae Rx1

51.827

99.195

0.514
  comEC/celB Streptococcus pneumoniae D39

51.827

99.195

0.514
  comEC/celB Streptococcus pneumoniae R6

51.827

99.195

0.514
  comEC Lactococcus lactis subsp. cremoris KW2

49.399

100

0.497