Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ViNHUV68_RS13275 Genome accession   NZ_CP134975
Coordinates   2897078..2898388 (-) Length   436 a.a.
NCBI ID   WP_391088511.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892078..2903388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS13255 (ViNHUV68_26730) - 2892770..2893597 (-) 828 WP_391088505.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  ViNHUV68_RS13260 (ViNHUV68_26740) - 2893700..2895181 (-) 1482 WP_391088507.1 AAA family ATPase -
  ViNHUV68_RS13265 (ViNHUV68_26750) aroB 2895269..2896357 (-) 1089 WP_391088509.1 3-dehydroquinate synthase -
  ViNHUV68_RS13270 (ViNHUV68_26760) aroK 2896383..2896901 (-) 519 WP_038175914.1 shikimate kinase AroK -
  ViNHUV68_RS13275 (ViNHUV68_26770) pilQ 2897078..2898388 (-) 1311 WP_391088511.1 type IV pilus secretin PilQ Machinery gene
  ViNHUV68_RS13280 (ViNHUV68_26780) - 2898388..2898780 (-) 393 WP_391088513.1 pilus assembly protein PilP -
  ViNHUV68_RS13285 (ViNHUV68_26790) pilO 2898773..2899330 (-) 558 WP_391088515.1 type 4a pilus biogenesis protein PilO -
  ViNHUV68_RS13290 (ViNHUV68_26800) - 2899327..2899872 (-) 546 WP_391088517.1 PilN domain-containing protein -
  ViNHUV68_RS13295 (ViNHUV68_26810) pilM 2899856..2900803 (-) 948 WP_391088519.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 46890.60 Da        Isoelectric Point: 4.9164

>NTDB_id=884396 ViNHUV68_RS13275 WP_391088511.1 2897078..2898388(-) (pilQ) [Vibrio sp. NH-UV-68]
MRSIIDNRRAARLSGVLASLCLLLNTGWVSQLSAAEITNNQAKLSFNFQDISVRDALRVIAQSQNINIAIDDSVSGQLTL
SLTEVTWQQALDTVVGVKGLTQHEQNGVMLIGSKQLSVDAGSELNSELIAVNYASADQLMQVLLGSSGFNLLSEHGALGV
DERTNVLLIRDYPEQIAATRKMVALLDVPIKQVQIEARIVTINQGNLEELGVRWGLSHVGHRAEVGGSIEGIRLDSATID
QMLNINLAAQAVNASSIAFQVAKLGSDTLLDLELSAMQRESKAEVISSPSLMTTNKKPAYIEQGTEIPYLESSSSGATNV
AFKKAVLSLKVTPQITPGDHVLLDLNVTQDRPGEVVNTGTGEAVAIDTQRIGTQVLVKNGETIVLGGIFQHSVFDSVDKV
PLLGDLPLLGGLFRRTYQKIGKRELVIFVTPNVIIE

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=884396 ViNHUV68_RS13275 WP_391088511.1 2897078..2898388(-) (pilQ) [Vibrio sp. NH-UV-68]
ATGCGTTCTATTATTGATAACCGTCGAGCAGCAAGGCTCAGCGGCGTGTTGGCAAGTTTGTGCCTATTATTGAACACTGG
GTGGGTAAGCCAGTTAAGTGCGGCTGAAATAACGAATAATCAGGCTAAGTTGTCATTCAACTTTCAAGATATCTCAGTTC
GGGATGCTTTACGCGTTATCGCACAGAGTCAGAATATCAATATTGCCATCGATGACTCGGTCAGTGGTCAGCTTACGCTG
AGTTTGACTGAGGTCACTTGGCAACAAGCGCTTGATACGGTGGTGGGGGTCAAAGGGCTTACTCAACATGAGCAAAATGG
CGTTATGCTGATTGGTTCCAAGCAACTTTCTGTTGATGCCGGCAGCGAGTTAAACTCAGAGTTGATCGCCGTTAACTATG
CCAGTGCCGATCAATTGATGCAGGTGTTGCTAGGGTCGAGTGGATTTAACCTTTTATCAGAACATGGGGCGTTAGGGGTC
GATGAGCGGACCAATGTCTTGCTGATTCGAGACTATCCAGAGCAGATTGCCGCAACCCGAAAAATGGTGGCGCTGCTTGA
TGTGCCGATCAAGCAAGTGCAAATCGAAGCACGCATTGTGACCATCAATCAAGGCAATCTTGAAGAGTTAGGCGTTCGTT
GGGGCTTGAGTCATGTTGGCCATCGCGCAGAGGTCGGTGGCAGCATTGAAGGCATTCGTCTTGACTCGGCCACTATCGAT
CAGATGTTAAACATCAATCTGGCCGCGCAGGCAGTGAATGCTTCATCGATTGCTTTTCAAGTGGCGAAGTTGGGGTCAGA
TACCTTACTGGATCTCGAACTGTCGGCGATGCAGCGCGAATCGAAAGCGGAAGTGATTTCGAGTCCGAGCTTAATGACTA
CCAATAAAAAGCCGGCGTATATTGAACAAGGAACCGAAATTCCCTATCTTGAGTCATCCTCCAGTGGTGCAACGAATGTG
GCGTTCAAGAAAGCCGTCTTGAGTTTAAAAGTGACGCCGCAGATCACGCCAGGGGATCATGTGCTGCTCGATTTAAATGT
CACTCAAGATAGGCCGGGTGAAGTGGTGAATACTGGCACTGGAGAAGCCGTGGCGATCGATACGCAACGCATCGGAACAC
AAGTATTAGTGAAGAATGGCGAAACTATCGTGCTGGGAGGGATTTTTCAACACAGTGTATTTGATAGTGTCGACAAGGTG
CCATTATTGGGTGACTTACCGCTGCTTGGTGGCTTATTTCGCCGAACTTACCAGAAAATAGGCAAACGTGAACTGGTGAT
TTTTGTGACTCCGAACGTCATCATTGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(276-434)

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

59.767

98.624

0.589
  pilQ Vibrio cholerae strain A1552

58.716

100

0.587
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

58.716

100

0.587
  comQ Acinetobacter baylyi ADP1

38.889

100

0.401
  pilQ Legionella pneumophila strain Lp02

41.106

95.413

0.392
  pilQ Legionella pneumophila strain ERS1305867

41.106

95.413

0.392
  comE Haemophilus influenzae Rd KW20

42.931

89.22

0.383
  comE Haemophilus influenzae 86-028NP

42.416

89.22

0.378
  pilQ Acinetobacter baumannii D1279779

35.385

100

0.369
  pilQ Acinetobacter baumannii strain A118

35.385

100

0.369
  pilQ Pseudomonas aeruginosa PAK

37.296

98.394

0.367