Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RKE25_RS17980 Genome accession   NZ_CP134867
Coordinates   4072343..4073608 (+) Length   421 a.a.
NCBI ID   WP_311839459.1    Uniprot ID   A0AA96IUG7
Organism   Dyella sp. BiH032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4067343..4078608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE25_RS17965 (RKE25_17965) - 4067920..4069368 (-) 1449 WP_311839456.1 oligosaccharide flippase family protein -
  RKE25_RS17970 (RKE25_17970) - 4069365..4070243 (-) 879 WP_311839457.1 glycosyltransferase family 2 protein -
  RKE25_RS17975 (RKE25_17975) pilB 4070481..4072202 (+) 1722 WP_311839458.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RKE25_RS17980 (RKE25_17980) pilC 4072343..4073608 (+) 1266 WP_311839459.1 type II secretion system F family protein Machinery gene
  RKE25_RS17985 (RKE25_17985) pilD 4073683..4074543 (+) 861 WP_311839460.1 A24 family peptidase Machinery gene
  RKE25_RS17990 (RKE25_17990) coaE 4074540..4075160 (+) 621 WP_311839461.1 dephospho-CoA kinase -
  RKE25_RS17995 (RKE25_17995) - 4075169..4076113 (-) 945 WP_311839462.1 Nudix family hydrolase -
  RKE25_RS18000 (RKE25_18000) - 4076134..4076622 (-) 489 WP_311839463.1 dihydrofolate reductase -
  RKE25_RS18005 (RKE25_18005) - 4076746..4077540 (-) 795 WP_311839464.1 thymidylate synthase -
  RKE25_RS18010 (RKE25_18010) lgt 4077545..4078375 (-) 831 WP_311839465.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45895.17 Da        Isoelectric Point: 10.1189

>NTDB_id=884211 RKE25_RS17980 WP_311839459.1 4072343..4073608(+) (pilC) [Dyella sp. BiH032]
MATVTAAKDARARGAERAAVSQLTMYDWIALDKRGKRMKGEMPAKNASLVKAELRRQGMNPQTVRERSKPLFGASGSKVK
PRDVAIFSRQIATMMASGVPMVQAFEIIADGQKNIRFKNMLVDVKQNIEGGAALHEALGKYPIQFDELYRNLVHAGESAG
VLDTVLDTVATYKERMEGIKSKIKKALFYPVMVLVVAMLVSMILLLFVVPVFQQTFKDAGAELPAPTQIVISASQFMQSY
WYVVIGVIVGSIVALVMAKNRSPAVAHFLDRLMLRIPVIGNILRQSAIARFARTLGVTFRAGVPLVEAMDAVAGATGSIV
YANAVRQMRDDVAVGHQLQLAMRQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVNNAVDTLSTLLEPLIMVILG
VLVGGMVVSLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=884211 RKE25_RS17980 WP_311839459.1 4072343..4073608(+) (pilC) [Dyella sp. BiH032]
ATGGCCACAGTCACGGCAGCCAAAGACGCTCGCGCCCGCGGCGCAGAGCGTGCCGCCGTCAGCCAGCTGACCATGTACGA
CTGGATCGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGCGAAATGCCGGCGAAGAACGCGTCGCTGGTCAAGGCCGAGC
TGCGCCGCCAGGGCATGAACCCCCAGACGGTCCGCGAGCGGTCCAAGCCGCTCTTCGGCGCCAGCGGCAGCAAGGTCAAG
CCGCGCGACGTCGCTATCTTCAGTCGCCAGATCGCCACGATGATGGCCTCAGGCGTGCCGATGGTGCAGGCCTTCGAGAT
CATCGCCGACGGCCAGAAGAACATCCGTTTCAAGAACATGCTCGTCGATGTGAAGCAGAACATCGAGGGCGGCGCGGCGC
TGCATGAGGCGCTGGGCAAGTATCCGATCCAGTTCGACGAGCTCTACCGCAACCTGGTGCATGCGGGCGAATCCGCGGGC
GTGCTGGACACGGTGCTGGACACCGTGGCCACGTACAAGGAGCGGATGGAGGGCATCAAGAGCAAGATCAAGAAGGCGCT
GTTCTATCCCGTCATGGTGCTGGTCGTGGCCATGCTGGTGAGCATGATCCTGCTGCTGTTCGTCGTGCCCGTGTTCCAGC
AGACCTTTAAGGATGCGGGCGCGGAACTGCCAGCGCCTACCCAGATCGTGATCAGCGCATCGCAGTTCATGCAGAGCTAC
TGGTACGTGGTGATCGGCGTCATCGTGGGCAGCATCGTGGCGCTCGTGATGGCCAAGAACCGGTCGCCGGCGGTGGCCCA
CTTCCTGGATCGCCTGATGCTGAGGATTCCGGTGATCGGCAACATCCTCCGCCAATCGGCCATCGCCCGCTTCGCCCGCA
CCCTCGGCGTGACTTTCCGTGCCGGCGTGCCGCTGGTCGAGGCGATGGACGCGGTCGCCGGCGCCACCGGCAGCATCGTC
TACGCCAATGCCGTGCGGCAAATGCGCGACGACGTCGCCGTCGGCCATCAGCTGCAGCTGGCCATGCGCCAGACCGGCCT
GTTCCCCAACATGGTGGTGCAGATGACCGCCATCGGCGAGGAATCCGGTGCCCTGGACAACATGCTGTTCAAGGTGGCCG
AGTTCTACGAGGAAGAGGTCAACAATGCCGTGGACACGCTGTCCACCCTGCTCGAACCGCTGATCATGGTGATCCTCGGC
GTGCTCGTCGGCGGCATGGTGGTATCGCTGTACCTGCCGATCTTCAAGCTCGCCGGCACGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.138

94.774

0.523
  pilC Pseudomonas stutzeri DSM 10701

52.764

94.537

0.499
  pilC Acinetobacter baylyi ADP1

49.5

95.012

0.47
  pilC Acinetobacter baumannii D1279779

49.874

94.299

0.47
  pilG Neisseria meningitidis 44/76-A

41.86

91.924

0.385
  pilG Neisseria gonorrhoeae MS11

41.86

91.924

0.385
  pilC Vibrio cholerae strain A1552

40

93.824

0.375
  pilC Vibrio campbellii strain DS40M4

39.5

95.012

0.375
  pilC Thermus thermophilus HB27

38.329

96.675

0.371