Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RKQ58_RS16925 Genome accession   NZ_CP134579
Coordinates   3316503..3317729 (+) Length   408 a.a.
NCBI ID   WP_000279218.1    Uniprot ID   A0A836M511
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3311503..3322729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS16890 (RKQ58_16885) rimP 3312168..3312692 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  RKQ58_RS16910 (RKQ58_16905) secG 3313334..3313663 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  RKQ58_RS16915 (RKQ58_16910) tpiA 3313676..3314470 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  RKQ58_RS16920 (RKQ58_16915) pilB 3314761..3316473 (+) 1713 WP_002058663.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RKQ58_RS16925 (RKQ58_16920) pilC 3316503..3317729 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  RKQ58_RS16930 (RKQ58_16925) pilD 3317729..3318589 (+) 861 WP_002061654.1 A24 family peptidase Machinery gene
  RKQ58_RS16935 (RKQ58_16930) coaE 3318591..3319187 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  RKQ58_RS16940 (RKQ58_16935) - 3319184..3319594 (-) 411 Protein_3128 EamA family transporter -
  RKQ58_RS16945 (RKQ58_16940) - 3319597..3320091 (-) 495 WP_001003818.1 IS630 family transposase -
  RKQ58_RS16950 (RKQ58_16945) - 3320139..3320444 (-) 306 WP_000122230.1 IS630 transposase-related protein -
  RKQ58_RS16955 (RKQ58_16950) - 3320480..3320986 (-) 507 Protein_3131 EamA family transporter -
  RKQ58_RS16960 (RKQ58_16955) rlmB 3321022..3321771 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKQ58_RS16965 (RKQ58_16960) - 3321873..3322199 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44923.43 Da        Isoelectric Point: 9.9566

>NTDB_id=881755 RKQ58_RS16925 WP_000279218.1 3316503..3317729(+) (pilC) [Acinetobacter baumannii strain XH1034]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=881755 RKQ58_RS16925 WP_000279218.1 3316503..3317729(+) (pilC) [Acinetobacter baumannii strain XH1034]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCAGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTAGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTAATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M511

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36