Detailed information NTG0881756

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ58_RS16930
• Genome accession: NZ_CP134579
• Coordinates: 3317729..3318589 (+)
• Length: 286 a.a.
• NCBI ID: WP_002061654.1
• Uniprot ID: N9KL48
• Organism: Acinetobacter baumannii strain XH1034
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3312729..3323589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ58_RS16910 (RKQ58_16905)	secG	3313334..3313663 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RKQ58_RS16915 (RKQ58_16910)	tpiA	3313676..3314470 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ58_RS16920 (RKQ58_16915)	pilB	3314761..3316473 (+)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ58_RS16925 (RKQ58_16920)	pilC	3316503..3317729 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RKQ58_RS16930 (RKQ58_16925)	pilD	3317729..3318589 (+)	861	WP_002061654.1	A24 family peptidase	Machinery gene
RKQ58_RS16935 (RKQ58_16930)	coaE	3318591..3319187 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RKQ58_RS16940 (RKQ58_16935)	-	3319184..3319594 (-)	411	Protein_3128	EamA family transporter	-
RKQ58_RS16945 (RKQ58_16940)	-	3319597..3320091 (-)	495	WP_001003818.1	IS630 family transposase	-
RKQ58_RS16950 (RKQ58_16945)	-	3320139..3320444 (-)	306	WP_000122230.1	IS630 transposase-related protein	-
RKQ58_RS16955 (RKQ58_16950)	-	3320480..3320986 (-)	507	Protein_3131	EamA family transporter	-
RKQ58_RS16960 (RKQ58_16955)	rlmB	3321022..3321771 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ58_RS16965 (RKQ58_16960)	-	3321873..3322199 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ58_RS16970 (RKQ58_16965)	-	3322276..3323484 (-)	1209	WP_308947747.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32083.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=881756 RKQ58_RS16930 WP_002061654.1 3317729..3318589(+) (pilD) [Acinetobacter baumannii strain XH1034]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=881756 RKQ58_RS16930 WP_002061654.1 3317729..3318589(+) (pilD) [Acinetobacter baumannii strain XH1034]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: N9KL48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441