Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RKQ62_RS16110 Genome accession   NZ_CP134566
Coordinates   3334951..3336177 (+) Length   408 a.a.
NCBI ID   WP_000279218.1    Uniprot ID   A0A836M511
Organism   Acinetobacter baumannii strain XH1038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3329951..3341177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS16075 (RKQ62_16125) rimP 3330616..3331140 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  RKQ62_RS16095 (RKQ62_16145) secG 3331782..3332111 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  RKQ62_RS16100 (RKQ62_16150) tpiA 3332124..3332918 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  RKQ62_RS16105 (RKQ62_16155) pilB 3333209..3334921 (+) 1713 WP_002058663.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RKQ62_RS16110 (RKQ62_16160) pilC 3334951..3336177 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  RKQ62_RS16115 (RKQ62_16165) pilD 3336177..3337037 (+) 861 WP_002061654.1 A24 family peptidase Machinery gene
  RKQ62_RS16120 (RKQ62_16170) coaE 3337039..3337635 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  RKQ62_RS16125 (RKQ62_16175) - 3337632..3338546 (-) 915 WP_000075011.1 DMT family transporter -
  RKQ62_RS16130 (RKQ62_16180) rlmB 3338582..3339331 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKQ62_RS16135 (RKQ62_16185) - 3339433..3339759 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RKQ62_RS16140 (RKQ62_16190) - 3339836..3341146 (-) 1311 WP_004842687.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44923.43 Da        Isoelectric Point: 9.9566

>NTDB_id=881576 RKQ62_RS16110 WP_000279218.1 3334951..3336177(+) (pilC) [Acinetobacter baumannii strain XH1038]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=881576 RKQ62_RS16110 WP_000279218.1 3334951..3336177(+) (pilC) [Acinetobacter baumannii strain XH1038]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCAGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTAGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTAATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M511

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36