NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RKQ62_RS16115	Genome accession	NZ_CP134566
Coordinates	3336177..3337037 (+)	Length	286 a.a.
NCBI ID	WP_002061654.1	Uniprot ID	N9KL48
Organism	Acinetobacter baumannii strain XH1038
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3331177..3342037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ62_RS16095 (RKQ62_16145)	secG	3331782..3332111 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RKQ62_RS16100 (RKQ62_16150)	tpiA	3332124..3332918 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ62_RS16105 (RKQ62_16155)	pilB	3333209..3334921 (+)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ62_RS16110 (RKQ62_16160)	pilC	3334951..3336177 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
RKQ62_RS16115 (RKQ62_16165)	pilD	3336177..3337037 (+)	861	WP_002061654.1	A24 family peptidase	Machinery gene
RKQ62_RS16120 (RKQ62_16170)	coaE	3337039..3337635 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RKQ62_RS16125 (RKQ62_16175)	-	3337632..3338546 (-)	915	WP_000075011.1	DMT family transporter	-
RKQ62_RS16130 (RKQ62_16180)	rlmB	3338582..3339331 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ62_RS16135 (RKQ62_16185)	-	3339433..3339759 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ62_RS16140 (RKQ62_16190)	-	3339836..3341146 (-)	1311	WP_004842687.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32083.45 Da Isoelectric Point: 7.1041

                                >NTDB_id=881577 RKQ62_RS16115 WP_002061654.1 3336177..3337037(+) (pilD) [Acinetobacter baumannii strain XH1038]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=881577 RKQ62_RS16115 WP_002061654.1 3336177..3337037(+) (pilD) [Acinetobacter baumannii strain XH1038]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	N9KL48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0881577