Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RKQ65_RS01985 Genome accession   NZ_CP134562
Coordinates   367633..368859 (-) Length   408 a.a.
NCBI ID   WP_000279215.1    Uniprot ID   A0A0H5FGB3
Organism   Acinetobacter baumannii strain XH1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362633..373859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS01955 (RKQ65_01955) - 362665..363975 (+) 1311 WP_020752743.1 tetratricopeptide repeat protein -
  RKQ65_RS01960 (RKQ65_01960) - 364052..364378 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RKQ65_RS01965 (RKQ65_01965) rlmB 364480..365229 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKQ65_RS01970 (RKQ65_01970) - 365264..366178 (+) 915 WP_000075015.1 DMT family transporter -
  RKQ65_RS01975 (RKQ65_01975) coaE 366175..366771 (-) 597 WP_000874124.1 dephospho-CoA kinase -
  RKQ65_RS01980 (RKQ65_01980) pilD 366773..367633 (-) 861 WP_001152269.1 A24 family peptidase Machinery gene
  RKQ65_RS01985 (RKQ65_01985) pilC 367633..368859 (-) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  RKQ65_RS01990 (RKQ65_01990) pilB 368889..370601 (-) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RKQ65_RS01995 (RKQ65_01995) tpiA 370892..371686 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  RKQ65_RS02000 (RKQ65_02000) secG 371699..372028 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  RKQ65_RS02020 (RKQ65_02020) rimP 372670..373194 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.46 Da        Isoelectric Point: 9.9566

>NTDB_id=881411 RKQ65_RS01985 WP_000279215.1 367633..368859(-) (pilC) [Acinetobacter baumannii strain XH1041]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=881411 RKQ65_RS01985 WP_000279215.1 367633..368859(-) (pilC) [Acinetobacter baumannii strain XH1041]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H5FGB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

100

100

1
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36