Detailed information NTG0881410

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ65_RS01980
• Genome accession: NZ_CP134562
• Coordinates: 366773..367633 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1041
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 361773..372633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ65_RS01955 (RKQ65_01955)	-	362665..363975 (+)	1311	WP_020752743.1	tetratricopeptide repeat protein	-
RKQ65_RS01960 (RKQ65_01960)	-	364052..364378 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ65_RS01965 (RKQ65_01965)	rlmB	364480..365229 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ65_RS01970 (RKQ65_01970)	-	365264..366178 (+)	915	WP_000075015.1	DMT family transporter	-
RKQ65_RS01975 (RKQ65_01975)	coaE	366175..366771 (-)	597	WP_000874124.1	dephospho-CoA kinase	-
RKQ65_RS01980 (RKQ65_01980)	pilD	366773..367633 (-)	861	WP_001152269.1	A24 family peptidase	Machinery gene
RKQ65_RS01985 (RKQ65_01985)	pilC	367633..368859 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
RKQ65_RS01990 (RKQ65_01990)	pilB	368889..370601 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ65_RS01995 (RKQ65_01995)	tpiA	370892..371686 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ65_RS02000 (RKQ65_02000)	secG	371699..372028 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=881410 RKQ65_RS01980 WP_001152269.1 366773..367633(-) (pilD) [Acinetobacter baumannii strain XH1041]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=881410 RKQ65_RS01980 WP_001152269.1 366773..367633(-) (pilD) [Acinetobacter baumannii strain XH1041]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437