Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RKQ70_RS17240 Genome accession   NZ_CP134552
Coordinates   3596576..3597802 (+) Length   408 a.a.
NCBI ID   WP_000279217.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591576..3602802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ70_RS17205 (RKQ70_17220) rimP 3592241..3592765 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  RKQ70_RS17225 (RKQ70_17240) secG 3593407..3593736 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  RKQ70_RS17230 (RKQ70_17245) tpiA 3593749..3594543 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  RKQ70_RS17235 (RKQ70_17250) pilB 3594834..3596546 (+) 1713 WP_001274994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RKQ70_RS17240 (RKQ70_17255) pilC 3596576..3597802 (+) 1227 WP_000279217.1 type II secretion system F family protein Machinery gene
  RKQ70_RS17245 (RKQ70_17260) pilD 3597802..3598662 (+) 861 WP_001152277.1 A24 family peptidase Machinery gene
  RKQ70_RS17250 (RKQ70_17265) coaE 3598664..3599260 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  RKQ70_RS17255 (RKQ70_17270) - 3599257..3600171 (-) 915 WP_000075018.1 DMT family transporter -
  RKQ70_RS17260 (RKQ70_17275) rlmB 3600207..3600956 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RKQ70_RS17265 (RKQ70_17280) - 3601058..3601384 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RKQ70_RS17270 (RKQ70_17285) - 3601461..3602771 (-) 1311 WP_000753279.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44925.40 Da        Isoelectric Point: 9.9566

>NTDB_id=881204 RKQ70_RS17240 WP_000279217.1 3596576..3597802(+) (pilC) [Acinetobacter baumannii strain XH1047]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAAIA
AFLEAKKRSKKFRDSLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=881204 RKQ70_RS17240 WP_000279217.1 3596576..3597802(+) (pilC) [Acinetobacter baumannii strain XH1047]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCCGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGCCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATAGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.02

100

0.99
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36