Detailed information NTG0881205

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ70_RS17245
• Genome accession: NZ_CP134552
• Coordinates: 3597802..3598662 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152277.1
• Uniprot ID: A0A009HWK1
• Organism: Acinetobacter baumannii strain XH1047
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3592802..3603662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ70_RS17225 (RKQ70_17240)	secG	3593407..3593736 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RKQ70_RS17230 (RKQ70_17245)	tpiA	3593749..3594543 (-)	795	WP_000016940.1	triose-phosphate isomerase	-
RKQ70_RS17235 (RKQ70_17250)	pilB	3594834..3596546 (+)	1713	WP_001274994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ70_RS17240 (RKQ70_17255)	pilC	3596576..3597802 (+)	1227	WP_000279217.1	type II secretion system F family protein	Machinery gene
RKQ70_RS17245 (RKQ70_17260)	pilD	3597802..3598662 (+)	861	WP_001152277.1	A24 family peptidase	Machinery gene
RKQ70_RS17250 (RKQ70_17265)	coaE	3598664..3599260 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RKQ70_RS17255 (RKQ70_17270)	-	3599257..3600171 (-)	915	WP_000075018.1	DMT family transporter	-
RKQ70_RS17260 (RKQ70_17275)	rlmB	3600207..3600956 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ70_RS17265 (RKQ70_17280)	-	3601058..3601384 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ70_RS17270 (RKQ70_17285)	-	3601461..3602771 (-)	1311	WP_000753279.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32038.43 Da
• Isoelectric Point: 7.1041

>NTDB_id=881205 RKQ70_RS17245 WP_001152277.1 3597802..3598662(+) (pilD) [Acinetobacter baumannii strain XH1047]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=881205 RKQ70_RS17245 WP_001152277.1 3597802..3598662(+) (pilD) [Acinetobacter baumannii strain XH1047]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A009HWK1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441