Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RJ609_RS19755 Genome accession   NZ_CP134269
Coordinates   4785799..4787055 (+) Length   418 a.a.
NCBI ID   WP_036104584.1    Uniprot ID   A0A120AHU6
Organism   Lysobacter capsici strain XL2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4780799..4792055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ609_RS19735 (RJ609_19735) - 4781491..4782366 (-) 876 WP_310978541.1 hypothetical protein -
  RJ609_RS19740 (RJ609_19740) - 4782347..4783048 (-) 702 WP_310978543.1 class I SAM-dependent methyltransferase -
  RJ609_RS19745 (RJ609_19745) - 4783039..4783932 (-) 894 WP_310978544.1 glycosyltransferase family 2 protein -
  RJ609_RS19750 (RJ609_19750) pilB 4784068..4785795 (+) 1728 WP_310978545.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RJ609_RS19755 (RJ609_19755) pilC 4785799..4787055 (+) 1257 WP_036104584.1 type II secretion system F family protein Machinery gene
  RJ609_RS19760 (RJ609_19760) - 4787077..4787964 (+) 888 WP_036104586.1 A24 family peptidase -
  RJ609_RS19765 (RJ609_19765) coaE 4787968..4788588 (+) 621 WP_310978547.1 dephospho-CoA kinase -
  RJ609_RS19770 (RJ609_19770) - 4788738..4789694 (-) 957 WP_310981870.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45409.76 Da        Isoelectric Point: 10.3304

>NTDB_id=879524 RJ609_RS19755 WP_036104584.1 4785799..4787055(+) (pilC) [Lysobacter capsici strain XL2]
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIKWWWA
VLILVVGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=879524 RJ609_RS19755 WP_036104584.1 4785799..4787055(+) (pilC) [Lysobacter capsici strain XL2]
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGAGCCGCCGGCAAGCGCATCACCCCCGGTGAA
ATCGCCATCTTCAGCCGTCAGATCGCGACGATGATGAAATCGGGCGTGCCGATCGTGACCTCGCTGGAGATCATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTGCGCGCCGACCTGGAAAGCGGCTCGTCCCTGCACGAGG
CCATGTCCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCACGGTCGTGGCCGTGGCGATCCTGGTGAGCGCCATCCTGCTGATCTTCGTGGTTCCGCAGTTCCAGGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGCGCCGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCATTTCCTCGA
CCGGGCCATGCTCAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCGCCCGTACCTTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTCGAAGCGCTCGACACGGTCGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
TATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAGCCACTGATCATGGTCATCCTCGGCGTGATCGTC
GGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120AHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.675

94.976

0.538
  pilC Legionella pneumophila strain ERS1305867

55.198

96.651

0.533
  pilC Acinetobacter baylyi ADP1

52.217

97.129

0.507
  pilC Acinetobacter baumannii D1279779

51.724

97.129

0.502
  pilG Neisseria gonorrhoeae MS11

43.424

96.411

0.419
  pilG Neisseria meningitidis 44/76-A

43.176

96.411

0.416
  pilC Vibrio campbellii strain DS40M4

40.796

96.172

0.392
  pilC Vibrio cholerae strain A1552

39.75

95.694

0.38
  pilC Thermus thermophilus HB27

36.967

100

0.373