Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHH53_RS10980 Genome accession   NZ_CP134169
Coordinates   2218022..2219719 (+) Length   565 a.a.
NCBI ID   WP_310743787.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PKX82     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2213022..2224719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHH53_RS10955 (RHH53_10955) - 2213402..2214103 (-) 702 WP_310743785.1 PilN domain-containing protein -
  RHH53_RS10960 (RHH53_10960) pilM 2214115..2215194 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHH53_RS10965 (RHH53_10965) - 2215458..2216039 (-) 582 WP_206200178.1 L,D-transpeptidase -
  RHH53_RS10970 (RHH53_10970) - 2216069..2216500 (-) 432 WP_206200179.1 hypothetical protein -
  RHH53_RS10975 (RHH53_10975) - 2216670..2217899 (-) 1230 WP_310743786.1 acetate kinase -
  RHH53_RS10980 (RHH53_10980) comA 2218022..2219719 (+) 1698 WP_310743787.1 phospholipase D-like domain-containing protein Machinery gene
  RHH53_RS10985 (RHH53_10985) - 2219747..2220259 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHH53_RS10990 (RHH53_10990) - 2220309..2221613 (-) 1305 WP_310743788.1 NCS2 family permease -
  RHH53_RS10995 (RHH53_10995) - 2222008..2223729 (+) 1722 WP_310743789.1 hypothetical protein -
  RHH53_RS11000 (RHH53_11000) - 2223747..2224538 (+) 792 WP_310743790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63151.78 Da        Isoelectric Point: 8.4300

>NTDB_id=878995 RHH53_RS10980 WP_310743787.1 2218022..2219719(+) (comA) [Thermosynechococcus sp. PKX82]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATSANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLRRARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTLIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQEQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=878995 RHH53_RS10980 WP_310743787.1 2218022..2219719(+) (comA) [Thermosynechococcus sp. PKX82]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGACTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTAGTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCGGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAATGGCTTGATTGGCCAAACACTACGTCGAGCACGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAAGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGCTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGTAATGATGAATTCTTGCTGGTGATTGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGGCTGCCGCAGCATATTCGCGATCGCATTCAGGAGCAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496