Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   RIN70_RS05560 Genome accession   NZ_CP134147
Coordinates   1073795..1074643 (-) Length   282 a.a.
NCBI ID   WP_272144044.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1068795..1079643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS05545 (RIN70_05545) - 1070154..1070858 (-) 705 WP_118228158.1 DUF3307 domain-containing protein -
  RIN70_RS05550 (RIN70_05550) - 1070842..1071519 (-) 678 WP_272144042.1 SatD family protein -
  RIN70_RS05555 (RIN70_05555) topA 1071627..1073708 (-) 2082 WP_023918171.1 type I DNA topoisomerase -
  RIN70_RS05560 (RIN70_05560) dprA/cilB/dalA 1073795..1074643 (-) 849 WP_272144044.1 DNA-processing protein DprA Machinery gene
  RIN70_RS05565 (RIN70_05565) - 1074705..1075634 (-) 930 WP_134974383.1 ROK family protein -
  RIN70_RS05570 (RIN70_05570) - 1075638..1076405 (-) 768 WP_134974382.1 ribonuclease HII -
  RIN70_RS05575 (RIN70_05575) ylqF 1076392..1077243 (-) 852 WP_134974381.1 ribosome biogenesis GTPase YlqF -
  RIN70_RS05580 (RIN70_05580) - 1077355..1077693 (-) 339 WP_003001449.1 ATP cone domain-containing protein -
  RIN70_RS10340 - 1078432..1078479 (+) 48 Protein_1048 hypothetical protein -
  RIN70_RS05590 (RIN70_05590) dapA 1078488..1079423 (-) 936 WP_313790421.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31691.44 Da        Isoelectric Point: 6.3419

>NTDB_id=878873 RIN70_RS05560 WP_272144044.1 1073795..1074643(-) (dprA/cilB/dalA) [Streptococcus parasanguinis strain 30.8.10]
MEKFEIFKLKEAGLSNEQVLRVLDYCRKDQALPCLEEIARIARCRSTLHFVDKYRQLDEDHLHKEFERFPSLSIFDPEYP
EELLQIYNPPVLLFYQGDLELLTRPKIAVVGARETTREGVRSVEKIIKELGNELVIVSGLAKGIDATAHYASIRNGGKTI
GVIGTGLDVFYPKSNQRLQAHMGEHHLILSEYGPGQAPLKFHFPERNRIIAGLCQAVIVAEARLRSGSLITCERAMEEGR
DVFAIPGNILDGKSAGCHHLIQEGAKLVTSGQDILDELKYEL

Nucleotide


Download         Length: 849 bp        

>NTDB_id=878873 RIN70_RS05560 WP_272144044.1 1073795..1074643(-) (dprA/cilB/dalA) [Streptococcus parasanguinis strain 30.8.10]
ATGGAGAAATTTGAAATTTTTAAATTAAAAGAAGCCGGTTTATCAAATGAACAAGTCTTAAGAGTCTTGGACTACTGTAG
GAAAGACCAAGCCTTACCATGTTTAGAAGAGATAGCAAGGATCGCTCGCTGTCGCAGCACTCTTCATTTTGTAGACAAAT
ACCGGCAGCTGGATGAAGACCATTTACACAAGGAGTTTGAACGGTTCCCATCTCTATCCATTTTTGATCCTGAATACCCT
GAGGAATTGCTACAGATCTACAATCCTCCTGTACTCCTTTTTTACCAGGGAGATTTGGAATTGTTAACCAGACCGAAGAT
TGCAGTCGTAGGAGCTCGGGAGACCACGCGAGAAGGGGTTCGTTCTGTAGAGAAGATTATTAAGGAACTTGGGAATGAGT
TGGTTATCGTTAGTGGACTTGCTAAGGGAATTGATGCGACAGCTCATTATGCCAGTATACGAAATGGTGGCAAGACCATC
GGAGTGATAGGAACGGGACTGGATGTCTTTTATCCTAAGAGCAATCAAAGACTGCAGGCGCATATGGGGGAACACCATCT
GATCTTGAGCGAGTATGGTCCAGGTCAGGCACCACTTAAGTTTCATTTTCCTGAGCGAAACCGCATCATTGCAGGCCTCT
GTCAGGCTGTAATTGTGGCAGAGGCGCGACTCCGTTCAGGGAGTTTGATTACTTGTGAGCGCGCTATGGAAGAAGGCCGA
GACGTTTTTGCTATTCCAGGAAACATTTTAGATGGAAAATCTGCAGGCTGCCATCATCTGATTCAAGAAGGTGCAAAGCT
TGTCACCTCAGGCCAGGACATTCTTGATGAATTGAAATACGAATTGTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

66.192

99.645

0.66
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

65.836

99.645

0.656
  dprA/cilB/dalA Streptococcus pneumoniae D39

65.836

99.645

0.656
  dprA/cilB/dalA Streptococcus pneumoniae R6

65.836

99.645

0.656
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

65.836

99.645

0.656
  dprA/cilB/dalA Streptococcus mitis SK321

65.48

99.645

0.652
  dprA Streptococcus mutans UA159

61.786

99.291

0.613
  dprA Lactococcus lactis subsp. cremoris KW2

52.313

99.645

0.521
  dprA Latilactobacillus sakei subsp. sakei 23K

42.545

97.518

0.415
  dprA Staphylococcus aureus MW2

35.959

100

0.372
  dprA Staphylococcus aureus N315

35.616

100

0.369
  dprA Legionella pneumophila strain ERS1305867

44.017

82.979

0.365