Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   RDV49_RS09010 Genome accession   NZ_CP133988
Coordinates   1876608..1877276 (-) Length   222 a.a.
NCBI ID   WP_003006327.1    Uniprot ID   A0AAX4AWN2
Organism   Streptococcus parasanguinis strain B-1756     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871608..1882276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS08990 (RDV49_08990) sodA 1871951..1872556 (-) 606 WP_003006336.1 superoxide dismutase SodA -
  RDV49_RS08995 (RDV49_08995) holA 1872645..1873679 (-) 1035 WP_003006333.1 DNA polymerase III subunit delta -
  RDV49_RS09000 (RDV49_09000) - 1873703..1874305 (-) 603 WP_003006331.1 DUF805 domain-containing protein -
  RDV49_RS09005 (RDV49_09005) comEC/celB 1874381..1876627 (-) 2247 WP_003006329.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RDV49_RS09010 (RDV49_09010) comEA/celA/cilE 1876608..1877276 (-) 669 WP_003006327.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV49_RS09015 (RDV49_09015) - 1877343..1878089 (-) 747 WP_003006324.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RDV49_RS09020 (RDV49_09020) - 1878265..1880604 (+) 2340 WP_003006320.1 cation-translocating P-type ATPase -
  RDV49_RS09025 (RDV49_09025) - 1880685..1881431 (+) 747 WP_003006317.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RDV49_RS09030 (RDV49_09030) - 1881421..1881684 (+) 264 WP_003006314.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23861.64 Da        Isoelectric Point: 5.3915

>NTDB_id=878178 RDV49_RS09010 WP_003006327.1 1876608..1877276(-) (comEA/celA/cilE) [Streptococcus parasanguinis strain B-1756]
MEDIIEKIKEYKLFFALTAIGLLLGGYFLFHRPQSSASTIPDLYQASSSTSSKEKVQTTSSKEEKTATSVSDAPEIITVD
VKGAVKQPGVYELRFNSRVHDAIHKAGGMTADANSQSVNLAQKLSDEAVIYVAKEGEDVPALGSSESSATSSASAEKTGK
VHLNRATESELQTVSGIGQKRAQDIIAYREANGPFRSVDDLKNVSGIGEKTLEKLRDAFTVD

Nucleotide


Download         Length: 669 bp        

>NTDB_id=878178 RDV49_RS09010 WP_003006327.1 1876608..1877276(-) (comEA/celA/cilE) [Streptococcus parasanguinis strain B-1756]
ATGGAGGATATCATCGAAAAAATCAAAGAATATAAACTCTTTTTTGCTCTTACTGCTATTGGACTCTTACTTGGAGGGTA
TTTTCTTTTTCATCGACCTCAGTCAAGTGCATCCACTATACCGGATCTTTATCAGGCTTCTAGTTCAACTTCGAGCAAAG
AAAAGGTGCAGACCACTAGTTCCAAAGAAGAAAAGACGGCGACTTCTGTGTCTGATGCACCCGAGATCATTACGGTCGAT
GTCAAAGGAGCCGTCAAACAACCAGGTGTCTATGAGTTGCGCTTCAATAGCAGAGTCCACGATGCCATTCATAAGGCAGG
CGGGATGACAGCAGATGCCAATAGCCAATCGGTCAACTTAGCGCAAAAACTCTCCGATGAAGCAGTGATCTATGTTGCTA
AAGAAGGAGAGGATGTTCCAGCACTTGGAAGTTCAGAAAGTTCCGCAACTTCGTCAGCATCAGCAGAAAAAACAGGCAAG
GTCCATTTGAATCGAGCGACCGAATCAGAGCTCCAGACAGTATCAGGCATTGGCCAGAAACGGGCCCAGGACATTATCGC
CTATCGCGAGGCAAATGGTCCTTTTCGATCAGTGGATGATCTGAAGAATGTTTCAGGAATCGGAGAGAAAACACTGGAGA
AACTAAGAGATGCTTTCACGGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(158-219)

SLBB domain (SLBB)

(79-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.