Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RHS38_RS11335 Genome accession   NZ_CP133891
Coordinates   2433951..2434235 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2428951..2439235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS11310 (RHS38_11310) - 2429448..2430662 (+) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -
  RHS38_RS11315 (RHS38_11315) yfbR 2430753..2431337 (+) 585 WP_005482513.1 5'-deoxynucleotidase -
  RHS38_RS11320 (RHS38_11320) - 2431350..2432684 (+) 1335 WP_041954079.1 anti-phage deoxyguanosine triphosphatase -
  RHS38_RS11325 (RHS38_11325) - 2432691..2433305 (-) 615 WP_005456903.1 tRNA-uridine aminocarboxypropyltransferase -
  RHS38_RS11330 (RHS38_11330) rrtA 2433309..2433860 (+) 552 WP_005482515.1 rhombosortase -
  RHS38_RS11335 (RHS38_11335) comEA 2433951..2434235 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  RHS38_RS11340 (RHS38_11340) ppiD 2434386..2436245 (-) 1860 WP_070225901.1 peptidylprolyl isomerase -
  RHS38_RS11345 (RHS38_11345) - 2436445..2436717 (-) 273 WP_005382341.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=877395 RHS38_RS11335 WP_021449594.1 2433951..2434235(-) (comEA) [Vibrio parahaemolyticus strain M0904]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=877395 RHS38_RS11335 WP_021449594.1 2433951..2434235(-) (comEA) [Vibrio parahaemolyticus strain M0904]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362