Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RF668_RS01230 Genome accession   NZ_CP133787
Coordinates   230333..230722 (-) Length   129 a.a.
NCBI ID   WP_043737422.1    Uniprot ID   A0AAX4A8E9
Organism   Lactococcus cremoris strain KCKM 0438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225333..235722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS01210 (RF668_01210) - 225735..227162 (+) 1428 WP_043737432.1 cell wall metabolism sensor histidine kinase WalK -
  RF668_RS01215 (RF668_01215) - 227353..228165 (+) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  RF668_RS01220 (RF668_01220) groL 228215..229843 (-) 1629 WP_011675465.1 chaperonin GroEL -
  RF668_RS01225 (RF668_01225) groES 229930..230214 (-) 285 WP_043737426.1 co-chaperone GroES -
  RF668_RS01230 (RF668_01230) ssbB 230333..230722 (-) 390 WP_043737422.1 single-stranded DNA-binding protein Machinery gene
  RF668_RS01235 (RF668_01235) nox 230813..232153 (-) 1341 WP_043737419.1 H2O-forming NADH oxidase -
  RF668_RS01240 (RF668_01240) ytpR 232315..232941 (-) 627 WP_011675461.1 YtpR family tRNA-binding protein -
  RF668_RS01245 (RF668_01245) - 233047..233364 (-) 318 WP_043737417.1 thioredoxin family protein -
  RF668_RS01250 (RF668_01250) - 233409..233693 (-) 285 WP_011675459.1 hypothetical protein -
  RF668_RS01255 (RF668_01255) pepA 233796..234863 (+) 1068 WP_021036726.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14769.85 Da        Isoelectric Point: 7.0198

>NTDB_id=876853 RF668_RS01230 WP_043737422.1 230333..230722(-) (ssbB) [Lactococcus cremoris strain KCKM 0438]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWEKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=876853 RF668_RS01230 WP_043737422.1 230333..230722(-) (ssbB) [Lactococcus cremoris strain KCKM 0438]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
AGAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTAAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

99.225

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

41.593

87.597

0.364