Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RHM55_RS11005 Genome accession   NZ_CP133784
Coordinates   2358553..2359770 (+) Length   405 a.a.
NCBI ID   WP_322181952.1    Uniprot ID   A0AAU0UER8
Organism   Pseudomonas sp. MH9.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353553..2364770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS10985 (RHM55_10985) nadC 2355057..2355905 (+) 849 WP_322181946.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RHM55_RS10995 (RHM55_10995) - 2356197..2356628 (-) 432 WP_322181948.1 pilin -
  RHM55_RS11000 (RHM55_11000) pilB 2356850..2358550 (+) 1701 WP_322181950.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RHM55_RS11005 (RHM55_11005) pilC 2358553..2359770 (+) 1218 WP_322181952.1 type II secretion system F family protein Machinery gene
  RHM55_RS11010 (RHM55_11010) pilD 2359773..2360645 (+) 873 WP_322181954.1 A24 family peptidase Machinery gene
  RHM55_RS11015 (RHM55_11015) coaE 2360642..2361265 (+) 624 WP_322181956.1 dephospho-CoA kinase -
  RHM55_RS11020 (RHM55_11020) yacG 2361262..2361465 (+) 204 WP_322181958.1 DNA gyrase inhibitor YacG -
  RHM55_RS11025 (RHM55_11025) - 2361492..2362190 (-) 699 WP_322181961.1 energy-coupling factor ABC transporter permease -
  RHM55_RS11030 (RHM55_11030) - 2362187..2362648 (-) 462 WP_322181964.1 hypothetical protein -
  RHM55_RS11035 (RHM55_11035) - 2362752..2363186 (-) 435 WP_322181966.1 DUF393 domain-containing protein -
  RHM55_RS11040 (RHM55_11040) folE 2363594..2364154 (+) 561 WP_322181968.1 GTP cyclohydrolase I FolE -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44112.95 Da        Isoelectric Point: 9.9828

>NTDB_id=876774 RHM55_RS11005 WP_322181952.1 2358553..2359770(+) (pilC) [Pseudomonas sp. MH9.2]
MATTAVKVSVYAWEGIDRKGTKLKGELSGHNPALIRAQLRKQGITPSKVRKKSTSFFSAGKKVKSLDIVLFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVEEVKQEVAAGNSFASALRKKPQYFDDLYCSLVDAGEQAGALETLLERVATYKEKT
EALKAKIKKAMTYPLAVLVVAFIVSAILLIKVVPQFQMVFAGFGAELPAFTLMVIGLSQILQDWWWIVIAAVVAGIFGFK
YAHKHSQRFRDGLDRGLLKIPIIGPLIYKSSIARYARTLSTTFAAGVPLVEALESVAGATGNVVFKNAVNKVKQDVSTGM
QLNFSMRSTGVFPTLAIQMTAIGEESGSLDGMLDKVATYYEDEVDNMVDSLTSLMEPFIMVILGVVVGGLVVAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=876774 RHM55_RS11005 WP_322181952.1 2358553..2359770(+) (pilC) [Pseudomonas sp. MH9.2]
ATGGCAACAACAGCAGTTAAGGTCAGTGTTTACGCTTGGGAAGGTATCGACAGGAAAGGCACCAAACTGAAGGGCGAATT
GAGTGGGCACAACCCTGCGCTGATAAGGGCCCAGCTACGTAAACAAGGCATTACTCCGAGTAAAGTGCGCAAAAAATCCA
CGTCGTTTTTTAGTGCTGGAAAAAAAGTAAAATCACTGGATATCGTACTGTTTACCCGACAGATGGCGACCATGATGAAA
GCGGGGGTTCCGCTGCTGCAGTCTTTCGACATCATCGGTGAAGGGTTCGATAACCCCAATATGCGAAAGCTGGTGGAGGA
GGTTAAACAGGAGGTGGCTGCGGGTAATAGTTTTGCCTCGGCGTTGCGCAAAAAGCCACAATATTTCGACGATCTGTACT
GCAGTCTGGTGGACGCCGGAGAGCAAGCGGGCGCGCTAGAAACTTTATTGGAAAGGGTTGCGACCTATAAAGAGAAAACC
GAAGCGCTGAAAGCCAAAATTAAAAAAGCCATGACCTACCCCCTCGCGGTATTGGTCGTAGCCTTTATTGTGTCAGCGAT
TCTTCTGATAAAAGTGGTGCCGCAGTTTCAGATGGTGTTTGCTGGCTTCGGTGCAGAATTACCGGCATTCACCCTGATGG
TGATAGGCCTGTCCCAGATACTGCAGGACTGGTGGTGGATCGTCATTGCCGCTGTTGTCGCAGGCATATTCGGCTTCAAA
TATGCCCATAAACATTCGCAACGGTTTCGCGACGGGCTGGACAGAGGCCTGCTGAAAATACCAATCATTGGGCCCCTTAT
TTATAAATCGTCGATCGCTCGATACGCTCGCACGCTGTCCACTACATTTGCCGCTGGCGTGCCCTTGGTTGAGGCGCTGG
AGTCAGTCGCAGGCGCGACAGGCAATGTTGTATTCAAGAATGCAGTCAATAAAGTAAAGCAGGATGTGTCCACTGGCATG
CAGCTGAATTTTTCCATGCGCAGCACAGGTGTTTTCCCCACCTTGGCGATTCAGATGACGGCCATCGGTGAAGAATCAGG
CTCTTTGGACGGAATGCTCGACAAGGTTGCGACCTATTACGAAGACGAAGTCGACAACATGGTCGATAGCCTGACCAGCC
TGATGGAGCCATTCATCATGGTGATCCTTGGCGTCGTCGTTGGCGGCCTGGTCGTCGCCATGTACCTTCCCATCTTCAAG
CTCGGCTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.049

100

0.76
  pilC Acinetobacter baumannii D1279779

62.469

98.025

0.612
  pilC Acinetobacter baylyi ADP1

62.312

98.272

0.612
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilC Vibrio cholerae strain A1552

44.691

100

0.447
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilG Neisseria meningitidis 44/76-A

43.781

99.259

0.435
  pilC Vibrio campbellii strain DS40M4

43.103

100

0.432