Detailed information NTG0876775

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RHM55_RS11010
• Genome accession: NZ_CP133784
• Coordinates: 2359773..2360645 (+)
• Length: 290 a.a.
• NCBI ID: WP_322181954.1
• Uniprot ID: A0AAU0UGV8
• Organism: Pseudomonas sp. MH9.2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2354773..2365645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM55_RS10985 (RHM55_10985)	nadC	2355057..2355905 (+)	849	WP_322181946.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RHM55_RS10995 (RHM55_10995)	-	2356197..2356628 (-)	432	WP_322181948.1	pilin	-
RHM55_RS11000 (RHM55_11000)	pilB	2356850..2358550 (+)	1701	WP_322181950.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RHM55_RS11005 (RHM55_11005)	pilC	2358553..2359770 (+)	1218	WP_322181952.1	type II secretion system F family protein	Machinery gene
RHM55_RS11010 (RHM55_11010)	pilD	2359773..2360645 (+)	873	WP_322181954.1	A24 family peptidase	Machinery gene
RHM55_RS11015 (RHM55_11015)	coaE	2360642..2361265 (+)	624	WP_322181956.1	dephospho-CoA kinase	-
RHM55_RS11020 (RHM55_11020)	yacG	2361262..2361465 (+)	204	WP_322181958.1	DNA gyrase inhibitor YacG	-
RHM55_RS11025 (RHM55_11025)	-	2361492..2362190 (-)	699	WP_322181961.1	energy-coupling factor ABC transporter permease	-
RHM55_RS11030 (RHM55_11030)	-	2362187..2362648 (-)	462	WP_322181964.1	hypothetical protein	-
RHM55_RS11035 (RHM55_11035)	-	2362752..2363186 (-)	435	WP_322181966.1	DUF393 domain-containing protein	-
RHM55_RS11040 (RHM55_11040)	folE	2363594..2364154 (+)	561	WP_322181968.1	GTP cyclohydrolase I FolE	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31816.27 Da
• Isoelectric Point: 8.1574

>NTDB_id=876775 RHM55_RS11010 WP_322181954.1 2359773..2360645(+) (pilD) [Pseudomonas sp. MH9.2]
MPLLDFLACSPLAFVLSTLILGLLIGSFLNVVIYRLPKMLEREWKIQAREVLALPPEPIGETFNLMLPHSQCPQCAHTIR
AWENLPVISYLCLGGKCSGCKAPISKRYPLVELACGVLSVFIAWHFGFGWPAAAMLVLSWGLLAMSLIDADHQLLPDALV
LPLLWLGLIVNTFGLFTSLHDALWGAVAGYMSLWLVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGLIMLRLRNAKTSTPIPFGPYLAIAGWIALLWGGQITASYMQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=876775 RHM55_RS11010 WP_322181954.1 2359773..2360645(+) (pilD) [Pseudomonas sp. MH9.2]
ATGCCCCTCCTCGACTTCCTGGCCTGCTCACCGCTGGCCTTTGTTTTATCCACCCTGATCCTGGGCCTTCTGATCGGTAG
TTTCCTCAACGTCGTCATCTACCGCTTGCCCAAAATGCTCGAACGCGAGTGGAAAATTCAGGCGCGGGAGGTATTGGCGT
TACCCCCCGAGCCCATCGGCGAAACGTTCAATCTGATGCTGCCCCACTCCCAGTGCCCGCAGTGCGCGCACACGATTCGC
GCCTGGGAAAACCTGCCGGTGATCAGCTATCTGTGTCTGGGCGGTAAATGCTCTGGCTGCAAGGCGCCGATCAGCAAGCG
TTACCCTTTGGTTGAGCTGGCCTGCGGTGTGCTCTCGGTGTTTATCGCCTGGCATTTCGGCTTTGGCTGGCCAGCGGCGG
CGATGCTGGTGTTGAGCTGGGGTTTGTTGGCGATGAGTCTGATCGATGCGGATCACCAACTACTGCCTGATGCACTGGTG
CTGCCGCTGTTGTGGCTGGGTTTGATCGTGAATACCTTCGGCCTGTTCACCAGCCTGCATGACGCTTTGTGGGGCGCAGT
GGCCGGGTACATGAGCCTGTGGCTGGTGTTTTGGCTGTTCAAGCTGGTCACGGGCAAGGAAGGCATGGGTTACGGTGACT
TCAAGTTGCTGGCGATGCTCGGCGCCTGGGGGGGCTGGCAGATTCTGCCGTTGACGATTCTCCTGTCGTCGCTGGTGGGT
GCGGTGCTGGGCCTGATTATGCTGCGGCTGCGCAATGCCAAGACCAGCACACCGATCCCCTTTGGTCCCTATCTGGCGAT
TGCAGGGTGGATTGCTTTGCTCTGGGGTGGTCAAATAACGGCCTCCTACATGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.636	94.828	0.528
pilD	Vibrio campbellii strain DS40M4	54.545	94.828	0.517
pilD	Acinetobacter baumannii D1279779	51.986	95.517	0.497
pilD	Acinetobacter nosocomialis M2	51.264	95.517	0.49
pilD	Neisseria gonorrhoeae MS11	52.239	92.414	0.483