Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RHM61_RS08905 Genome accession   NZ_CP133779
Coordinates   1937696..1938922 (-) Length   408 a.a.
NCBI ID   WP_322250762.1    Uniprot ID   A0AAU0SDE8
Organism   Undibacterium sp. CCC3.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932696..1943922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS08875 (RHM61_08875) - 1933010..1933576 (+) 567 WP_322250756.1 hypothetical protein -
  RHM61_RS08880 (RHM61_08880) - 1933616..1935166 (+) 1551 WP_322250757.1 sigma 54-interacting transcriptional regulator -
  RHM61_RS08885 (RHM61_08885) - 1935179..1935355 (-) 177 WP_322250758.1 DNA gyrase inhibitor YacG -
  RHM61_RS08890 (RHM61_08890) zapD 1935358..1936113 (-) 756 WP_322250759.1 cell division protein ZapD -
  RHM61_RS08895 (RHM61_08895) coaE 1936220..1936837 (-) 618 WP_322250760.1 dephospho-CoA kinase -
  RHM61_RS08900 (RHM61_08900) pilD 1936845..1937696 (-) 852 WP_322250761.1 A24 family peptidase Machinery gene
  RHM61_RS08905 (RHM61_08905) pilC 1937696..1938922 (-) 1227 WP_322250762.1 type II secretion system F family protein Machinery gene
  RHM61_RS08910 (RHM61_08910) pilB 1938937..1940664 (-) 1728 WP_322250763.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RHM61_RS08915 (RHM61_08915) ispB 1940854..1941783 (-) 930 WP_322251074.1 octaprenyl diphosphate synthase -
  RHM61_RS08920 (RHM61_08920) rplU 1942119..1942430 (+) 312 WP_322250764.1 50S ribosomal protein L21 -
  RHM61_RS08925 (RHM61_08925) rpmA 1942463..1942720 (+) 258 WP_322250765.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44506.50 Da        Isoelectric Point: 9.6998

>NTDB_id=876695 RHM61_RS08905 WP_322250762.1 1937696..1938922(-) (pilC) [Undibacterium sp. CCC3.4]
MATNSGRAPKPIKEVLYAWEGKDKHGKLVQGEMRAGGEAIVNVTLRRQGILVTKLKKKNYTSGKKITDADITLFTRQLAT
MMKAGVPLLQSFDIVAKGNANPSVSKLLQDIRGDVETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILDDLLTRLAVYK
EKTMLMKKKIKSALTYPIAILSVAFIVTAVIMIWVVPAFKQVFSSFGADLPGPTLVVMAISEFFVAYWYLIFGGLFGSIY
FFMQTWQRSLPMQRFMDRMLLQAPIFGSVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATIKIQTEVS
TGTSLTVAMQNSNVFPSMVTQMVAIGEESGALDNMLSKVADFYEEEVDEAVASLASLMEPIIMAVLGVIIGGLVIAMYLP
IFKLGNVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=876695 RHM61_RS08905 WP_322250762.1 1937696..1938922(-) (pilC) [Undibacterium sp. CCC3.4]
ATGGCAACTAATTCCGGCCGAGCGCCCAAGCCGATCAAAGAAGTCTTGTATGCCTGGGAAGGTAAAGACAAGCACGGCAA
ATTGGTACAGGGTGAAATGCGCGCCGGCGGTGAGGCGATCGTCAATGTCACACTGCGTCGCCAAGGTATCTTGGTCACCA
AGCTGAAGAAGAAAAATTACACCTCGGGGAAAAAAATCACCGATGCCGACATCACCCTGTTTACCCGTCAATTAGCGACG
ATGATGAAGGCCGGCGTACCCTTGCTGCAATCGTTCGATATCGTCGCCAAGGGCAATGCCAACCCCTCCGTTTCCAAGCT
GCTGCAAGATATACGCGGTGACGTCGAAACCGGCACCAGTTTGAATCAGGCCTTCCGTAAATTCCCGCTGTATTTTGATC
CCTTATTCTGTAACTTGGTTGGTGCCGGCGAACAGGCCGGTATTCTCGATGATCTGCTCACCCGCTTGGCAGTTTATAAA
GAAAAAACCATGCTGATGAAAAAGAAGATCAAATCAGCACTGACCTACCCGATCGCGATTCTGTCGGTCGCCTTCATCGT
CACGGCCGTGATCATGATTTGGGTGGTACCGGCGTTCAAACAGGTGTTCAGCAGTTTCGGTGCCGATTTGCCGGGACCGA
CGCTGGTGGTAATGGCGATCTCGGAGTTTTTCGTCGCGTATTGGTATTTGATTTTCGGTGGGCTGTTCGGCAGCATCTAC
TTTTTCATGCAAACTTGGCAGCGCTCGCTGCCTATGCAACGCTTCATGGACCGCATGCTGTTGCAAGCCCCGATCTTCGG
TTCGGTCATCCGCAAAGCTACCATCGCGCGCTGGACGCGTACCTTGGCCACCATGTTCGCGGCCGGCGTGCCCTTGGTAG
AATCATTGGATTCGGTTGGCGGCGCGGCGGGCAATGCGGTCTACCTCGATGCCACGATTAAAATTCAAACCGAGGTCAGC
ACCGGTACCAGCCTGACTGTGGCGATGCAAAATTCGAATGTCTTTCCGAGTATGGTGACGCAAATGGTGGCCATCGGTGA
AGAGTCGGGTGCACTCGATAATATGCTGAGCAAAGTGGCCGACTTCTATGAAGAAGAAGTCGATGAAGCGGTGGCATCGC
TGGCCAGTCTGATGGAGCCGATCATCATGGCGGTACTCGGCGTGATCATCGGCGGGCTGGTGATTGCAATGTATCTGCCT
ATCTTTAAATTGGGTAATGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

99.02

0.532
  pilC Legionella pneumophila strain ERS1305867

54.293

97.059

0.527
  pilG Neisseria gonorrhoeae MS11

51.345

100

0.515
  pilG Neisseria meningitidis 44/76-A

51.1

100

0.512
  pilC Acinetobacter baumannii D1279779

51.889

97.304

0.505
  pilC Acinetobacter baylyi ADP1

51.005

97.549

0.498
  pilC Vibrio cholerae strain A1552

39.552

98.529

0.39
  pilC Vibrio campbellii strain DS40M4

39.295

97.304

0.382
  pilC Thermus thermophilus HB27

38.75

98.039

0.38