Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RGC88_RS09855 Genome accession   NZ_CP133768
Coordinates   2166175..2167443 (+) Length   422 a.a.
NCBI ID   WP_058710513.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YT9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161175..2172443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC88_RS09825 (RGC88_09825) - 2162018..2162272 (+) 255 WP_013370745.1 DUF3243 domain-containing protein -
  RGC88_RS09830 (RGC88_09830) - 2162501..2163274 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  RGC88_RS09835 (RGC88_09835) - 2163305..2164399 (+) 1095 WP_064963091.1 RodZ domain-containing protein -
  RGC88_RS09840 (RGC88_09840) - 2164484..2164648 (+) 165 WP_013370749.1 hypothetical protein -
  RGC88_RS09845 (RGC88_09845) - 2164794..2165285 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  RGC88_RS09850 (RGC88_09850) pgsA 2165494..2166081 (+) 588 WP_013370751.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RGC88_RS09855 (RGC88_09855) cinA 2166175..2167443 (+) 1269 WP_058710513.1 competence/damage-inducible protein A Machinery gene
  RGC88_RS09860 (RGC88_09860) recA 2167670..2168731 (+) 1062 WP_025679773.1 recombinase RecA Machinery gene
  RGC88_RS09865 (RGC88_09865) - 2168943..2169692 (+) 750 WP_346835567.1 regulatory protein RecX -
  RGC88_RS09870 (RGC88_09870) rny 2170054..2171598 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46398.40 Da        Isoelectric Point: 4.7168

>NTDB_id=876558 RGC88_RS09855 WP_058710513.1 2166175..2167443(+) (cinA) [Paenibacillus polymyxa strain YT9]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIESQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=876558 RGC88_RS09855 WP_058710513.1 2166175..2167443(+) (cinA) [Paenibacillus polymyxa strain YT9]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTGTCACA
AGAGCTAGCTACTATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GTCTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGGCCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGCTGTACTGGGGCGAAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTGGATCAGTTTTTCCGTAACCGCGG
GGTAGAAATGACCGAGAATAACCGCCGTCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACGGGTTTAG
CTATAGGGGATGCCATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCACCTAAGGAACTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTAAGCGGTGAGGAGATGCCGATTTATTCGAAAATGCTAAAATT
CGCAGGGATCGGTGAGTCAGCTCTTGAAACGCGCTTGTTAGATCTGATCGAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTGACGGCT
ACGGAAGTACAAATTCAGCAGCGTCTTTCCGAATATATGTATGCAAGTGAGGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAGCGCGGACTTACTGTGAGCGCAGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGCGATTTCGGACTTTCTGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGCCTGG
TGTATATTGGTATTGCTGAGCGCGACAAGGAAACAGAAGTATATGAGCTGAATTTAAGCGGTAACCGTGAGACCATCCGT
TTGCGATCTGTCAAAGCTATCCTGTACAGATTGTGGCGCCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41