Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RGC88_RS09860 Genome accession   NZ_CP133768
Coordinates   2167670..2168731 (+) Length   353 a.a.
NCBI ID   WP_025679773.1    Uniprot ID   A0A3G8R5S9
Organism   Paenibacillus polymyxa strain YT9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2162670..2173731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC88_RS09835 (RGC88_09835) - 2163305..2164399 (+) 1095 WP_064963091.1 RodZ domain-containing protein -
  RGC88_RS09840 (RGC88_09840) - 2164484..2164648 (+) 165 WP_013370749.1 hypothetical protein -
  RGC88_RS09845 (RGC88_09845) - 2164794..2165285 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  RGC88_RS09850 (RGC88_09850) pgsA 2165494..2166081 (+) 588 WP_013370751.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RGC88_RS09855 (RGC88_09855) cinA 2166175..2167443 (+) 1269 WP_058710513.1 competence/damage-inducible protein A Machinery gene
  RGC88_RS09860 (RGC88_09860) recA 2167670..2168731 (+) 1062 WP_025679773.1 recombinase RecA Machinery gene
  RGC88_RS09865 (RGC88_09865) - 2168943..2169692 (+) 750 WP_346835567.1 regulatory protein RecX -
  RGC88_RS09870 (RGC88_09870) rny 2170054..2171598 (+) 1545 WP_013309958.1 ribonuclease Y -
  RGC88_RS09875 (RGC88_09875) - 2171675..2172469 (+) 795 WP_058710511.1 TIGR00282 family metallophosphoesterase -
  RGC88_RS09880 (RGC88_09880) - 2172599..2172859 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38233.57 Da        Isoelectric Point: 4.9974

>NTDB_id=876559 RGC88_RS09860 WP_025679773.1 2167670..2168731(+) (recA) [Paenibacillus polymyxa strain YT9]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTIAPPTEEELAQEAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=876559 RGC88_RS09860 WP_025679773.1 2167670..2168731(+) (recA) [Paenibacillus polymyxa strain YT9]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCTACTCACATGCAAGTGGAAACAATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATTGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCGCTTGATCCGTCGTATGCGAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGTGAGCAGGCATTGGAGATTGCCGAAGCTCTTGTGCGTAGTG
GGGCAGTGGACATTATCGTCGTTGACTCTGTAGCGGCACTTGTACCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CATGTCGGTCTTCAAGCGCGCTTGATGTCACAGGCATTGCGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATCAACCAGCTCCGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAAACTACACCGGGTGGACGTGCCTTGA
AGTTTTACTCTACGGTACGGTTGGATGTTCGTCGTATCGAAAGCTTGAAAATGGGTAACGACATCGTGGGTAACCGTACA
CGTATTAAAGTCGTGAAGAATAAAGTCGCACCTCCTTTCCGTCAGGCTGAAGTGGATATTATGTACGGTGAGGGCATTTC
CAAAGAAGGAAGCTTGATCGATATCGGTACGGAGCACGACATTGTCGACAAGAGCGGAGCATGGTATTCCTACGAAGGCG
AGCGCCTTGGTCAGGGACGTGAGAATGCAAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATCGAGCAAAAA
ATCCGGGTGGCCAGTAATTTGATTACAACAATTGCTCCACCGACAGAAGAAGAGTTGGCGCAGGAGGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R5S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.714

91.218

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

66.762

98.867

0.66
  recA Streptococcus mitis SK321

66.476

98.867

0.657
  recA Streptococcus mutans UA159

66

99.15

0.654
  recA Streptococcus pneumoniae R6

68.58

93.768

0.643
  recA Streptococcus pneumoniae D39

68.58

93.768

0.643
  recA Streptococcus pneumoniae TIGR4

68.58

93.768

0.643
  recA Streptococcus pneumoniae Rx1

68.58

93.768

0.643
  recA Streptococcus pyogenes NZ131

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae strain FA1090

64.97

94.618

0.615
  recA Acinetobacter baylyi ADP1

61.364

99.717

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

90.652

0.609
  recA Vibrio cholerae strain A1552

67.188

90.652

0.609
  recA Acinetobacter baumannii D1279779

61.782

98.584

0.609
  recA Pseudomonas stutzeri DSM 10701

62.757

96.601

0.606
  recA Glaesserella parasuis strain SC1401

61.143

99.15

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

95.467

0.603
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.252

0.589
  recA Helicobacter pylori 26695

61.243

95.751

0.586
  recA Helicobacter pylori strain NCTC11637

60.947

95.751

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.27

92.351

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

91.501

0.55