Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RGU78_RS16555 Genome accession   NZ_CP133712
Coordinates   3459228..3460454 (+) Length   408 a.a.
NCBI ID   WP_342041226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3454228..3465454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS16520 (RGU78_16545) rimP 3454893..3455417 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  RGU78_RS16540 (RGU78_16565) secG 3456059..3456388 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  RGU78_RS16545 (RGU78_16570) tpiA 3456401..3457195 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  RGU78_RS16550 (RGU78_16575) pilB 3457486..3459198 (+) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RGU78_RS16555 (RGU78_16580) pilC 3459228..3460454 (+) 1227 WP_342041226.1 type II secretion system F family protein Machinery gene
  RGU78_RS16560 (RGU78_16585) pilD 3460454..3461314 (+) 861 WP_001152278.1 A24 family peptidase Machinery gene
  RGU78_RS16565 (RGU78_16590) coaE 3461316..3461912 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  RGU78_RS16570 (RGU78_16595) - 3461909..3462823 (-) 915 WP_000075015.1 DMT family transporter -
  RGU78_RS16575 (RGU78_16600) rlmB 3462859..3463608 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RGU78_RS16580 (RGU78_16605) - 3463710..3464036 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RGU78_RS16585 (RGU78_16610) - 3464113..3465423 (-) 1311 WP_002055139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45022.57 Da        Isoelectric Point: 10.0199

>NTDB_id=876031 RGU78_RS16555 WP_342041226.1 3459228..3460454(+) (pilC) [Acinetobacter baumannii strain CRAb1]
MAVKKAQMMPTFAYEGVDRKGVKIKRELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=876031 RGU78_RS16555 WP_342041226.1 3459228..3460454(+) (pilC) [Acinetobacter baumannii strain CRAb1]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAAGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTAGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGAATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATCCGGGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

50.867

84.804

0.431
  pilG Neisseria meningitidis 44/76-A

50.867

84.804

0.431
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404
  pilC Thermus thermophilus HB27

36.658

98.284

0.36