Detailed information NTG0876032

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RGU78_RS16560
• Genome accession: NZ_CP133712
• Coordinates: 3460454..3461314 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152278.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain CRAb1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3455454..3466314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGU78_RS16540 (RGU78_16565)	secG	3456059..3456388 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RGU78_RS16545 (RGU78_16570)	tpiA	3456401..3457195 (-)	795	WP_000016940.1	triose-phosphate isomerase	-
RGU78_RS16550 (RGU78_16575)	pilB	3457486..3459198 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RGU78_RS16555 (RGU78_16580)	pilC	3459228..3460454 (+)	1227	WP_342041226.1	type II secretion system F family protein	Machinery gene
RGU78_RS16560 (RGU78_16585)	pilD	3460454..3461314 (+)	861	WP_001152278.1	A24 family peptidase	Machinery gene
RGU78_RS16565 (RGU78_16590)	coaE	3461316..3461912 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
RGU78_RS16570 (RGU78_16595)	-	3461909..3462823 (-)	915	WP_000075015.1	DMT family transporter	-
RGU78_RS16575 (RGU78_16600)	rlmB	3462859..3463608 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RGU78_RS16580 (RGU78_16605)	-	3463710..3464036 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RGU78_RS16585 (RGU78_16610)	-	3464113..3465423 (-)	1311	WP_002055139.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32056.47 Da
• Isoelectric Point: 7.1041

>NTDB_id=876032 RGU78_RS16560 WP_001152278.1 3460454..3461314(+) (pilD) [Acinetobacter baumannii strain CRAb1]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=876032 RGU78_RS16560 WP_001152278.1 3460454..3461314(+) (pilD) [Acinetobacter baumannii strain CRAb1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.301	100	0.993
pilD	Acinetobacter nosocomialis M2	98.951	100	0.99
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441