Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   STNY_RS17065 Genome accession   NZ_AP024684
Coordinates   3676343..3677602 (+) Length   419 a.a.
NCBI ID   WP_130767793.1    Uniprot ID   -
Organism   Stenotrophomonas pavanii strain Y     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671343..3682602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STNY_RS17050 (STNY_R33870) - 3671864..3674896 (-) 3033 WP_130767796.1 fused MFS/spermidine synthase -
  STNY_RS17055 (STNY_R33880) - 3675012..3675419 (-) 408 WP_338061741.1 pilin -
  STNY_RS17060 (STNY_R33890) pilE 3675563..3675991 (-) 429 WP_130767794.1 pilin Machinery gene
  STNY_RS17065 (STNY_R33900) pilC 3676343..3677602 (+) 1260 WP_130767793.1 type II secretion system F family protein Machinery gene
  STNY_RS17070 (STNY_R33910) - 3677611..3678474 (+) 864 WP_049416956.1 A24 family peptidase -
  STNY_RS17075 (STNY_R33920) coaE 3678486..3679097 (+) 612 WP_130767792.1 dephospho-CoA kinase -
  STNY_RS17080 (STNY_R33930) - 3679156..3679542 (-) 387 WP_049442671.1 hypothetical protein -
  STNY_RS17085 (STNY_R33940) - 3680035..3681405 (-) 1371 WP_049466038.1 HAMP domain-containing sensor histidine kinase -
  STNY_RS17090 (STNY_R33950) - 3681368..3682045 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45850.26 Da        Isoelectric Point: 10.0498

>NTDB_id=87507 STNY_RS17065 WP_130767793.1 3676343..3677602(+) (pilC) [Stenotrophomonas pavanii strain Y]
MSVSRSAMKKDPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRRQGITPGQVKAKPKPLFGAAGKAVGAKD
VAFFSRQMATMMKSGVPIVAALEIIGSGHKNPRMKKMVDNIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTIANYKENIEALKGKIKKALFYPAMVVVVALLVSTIMLIFVVPQFEEVFKGFGAELPAFTQMIVTASRFMVSWWWL
MAIVLIGSGVALFMSYNRSPKMQHTFDRLILKVPVIGEIMNNSAIARFARTTAVTFRAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQQNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMIFIGIVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=87507 STNY_RS17065 WP_130767793.1 3676343..3677602(+) (pilC) [Stenotrophomonas pavanii strain Y]
ATGTCAGTCAGTCGTAGTGCTATGAAGAAGGACCCGGTGGCTCGCTCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGGATCAAGATGAAGGGCGAACAGTTGGCGAAGAATGCCAACCTGCTGCGCGCCGAACTCCGCCGCC
AAGGAATCACCCCTGGCCAAGTCAAGGCCAAGCCCAAACCGCTGTTTGGGGCAGCAGGCAAGGCGGTAGGAGCCAAGGAC
GTGGCGTTCTTCAGTCGCCAGATGGCCACAATGATGAAGTCCGGCGTGCCGATTGTCGCGGCGCTGGAGATCATTGGGAG
CGGGCATAAGAACCCGCGCATGAAGAAGATGGTCGACAACATCCGCACCGACATCGAAGGCGGATCTTCTCTTTACGAGG
CCATCAGCAAGCATCCTGTGCAGTTCGACGAACTCTATCGAAATTTGGTGCGCGCGGGCGAAGGTGCTGGTGTGCTTGAG
ACTGTGCTTGACACCATCGCCAACTATAAAGAGAACATTGAAGCCCTGAAGGGCAAAATCAAGAAGGCACTGTTCTATCC
CGCCATGGTGGTAGTGGTCGCCTTGCTGGTCAGCACCATCATGCTGATCTTTGTCGTTCCGCAGTTTGAAGAAGTCTTCA
AGGGCTTCGGCGCTGAGCTGCCAGCATTCACTCAGATGATCGTGACCGCCTCGCGTTTCATGGTTTCGTGGTGGTGGCTG
ATGGCGATCGTGCTGATTGGGTCAGGCGTTGCGCTGTTCATGAGCTATAACCGCTCTCCAAAGATGCAGCACACATTCGA
CAGGCTGATTCTGAAAGTGCCTGTGATCGGCGAGATCATGAATAACAGCGCCATCGCCCGATTTGCTCGTACAACTGCGG
TCACCTTTAGGGCCGGTGTGCCGTTGGTGGAAGCGCTGGGTATCGTTGCAGGCGCGACCGGCAACAAGGTCTATGAGGAA
GCCGTCCTGCGCATGCGCGATGATGTATCGGTCGGCTATCCGGTCAACATGGCCATGAAGCAGCAGAACCTGTTCCCCCA
TATGGTCATCCAGATGACCGGCATCGGTGAAGAAGCTGGCGCCTTGGATGCCATGCTGTTCAAGGTTGCCGAGTACTATG
AACAGGAGGTAAACAATGCCGTGGATGCGCTAAGCAGCCTGCTCGAACCGATGATCATGATCTTCATCGGTATCGTCGTT
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.98

96.42

0.501
  pilC Pseudomonas stutzeri DSM 10701

52.02

94.511

0.492
  pilC Acinetobacter baylyi ADP1

49.631

97.136

0.482
  pilC Acinetobacter baumannii D1279779

49.37

94.749

0.468
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

43.358

95.227

0.413
  pilC Vibrio cholerae strain A1552

41.422

97.375

0.403
  pilC Vibrio campbellii strain DS40M4

39.9

95.704

0.382
  pilC Thermus thermophilus HB27

37.811

95.943

0.363

Multiple sequence alignment