Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RB215_RS01925 Genome accession   NZ_CP133571
Coordinates   400011..401240 (-) Length   409 a.a.
NCBI ID   WP_309216750.1    Uniprot ID   A0AA51S8C7
Organism   Pseudoalteromonas sp. HL-AS2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395011..406240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB215_RS01900 (RB215_01900) - 395554..396039 (+) 486 WP_011327087.1 Spy/CpxP family protein refolding chaperone -
  RB215_RS01905 (RB215_01905) yacG 396276..396506 (-) 231 WP_011327088.1 DNA gyrase inhibitor YacG -
  RB215_RS01910 (RB215_01910) pilB 396662..398335 (-) 1674 WP_309216747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RB215_RS01915 (RB215_01915) coaE 398456..399088 (-) 633 WP_309216748.1 dephospho-CoA kinase -
  RB215_RS01920 (RB215_01920) pilD 399090..399974 (-) 885 WP_309216749.1 A24 family peptidase Machinery gene
  RB215_RS01925 (RB215_01925) pilC 400011..401240 (-) 1230 WP_309216750.1 type II secretion system F family protein Machinery gene
  RB215_RS01930 (RB215_01930) - 401324..401770 (-) 447 WP_309216752.1 pilin -
  RB215_RS01935 (RB215_01935) nadC 402308..403153 (-) 846 WP_309216753.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RB215_RS01940 (RB215_01940) ampD 403473..404027 (+) 555 WP_309216754.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RB215_RS01945 (RB215_01945) ampE 404041..404892 (+) 852 WP_011327100.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44545.62 Da        Isoelectric Point: 9.7879

>NTDB_id=874982 RB215_RS01925 WP_309216750.1 400011..401240(-) (pilC) [Pseudoalteromonas sp. HL-AS2]
MSTKQEKKSLDTFQWIGVSTRGKRLEGELTGSSIALVKAQLRKQGITPSKVKRKAKPLFGIASTQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGTGSSNKSVSKLMETIADEVKAGQPLSQALRRHPRYFDDLYCDLVASGEQSGALDKIFDRVAIY
KEKSEALKSKIKKAMFYPIAVLVIALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIAISEFMQEYWWMMLIVIVAFG
WAFKEAKLKSLKLRDATDRAVLKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=874982 RB215_RS01925 WP_309216750.1 400011..401240(-) (pilC) [Pseudoalteromonas sp. HL-AS2]
ATGTCTACTAAACAGGAAAAAAAAAGTTTAGACACTTTCCAGTGGATAGGTGTTAGCACTAGGGGAAAGCGCTTAGAAGG
TGAACTTACTGGTTCTAGTATCGCACTAGTAAAAGCCCAGTTACGAAAACAAGGCATTACCCCTTCCAAAGTAAAGCGAA
AAGCTAAGCCTCTTTTTGGTATAGCTAGCACTCAAAAAATAACCCCGAAAGATATTGCTTTAGTGACTCGGCAAATTGCT
ACCATGCTGATGGCGGGCGTTCCATTAATTCAATCTATTGAAATGATTGGCACGGGATCATCTAATAAAAGTGTTAGCAA
GCTAATGGAAACCATTGCCGATGAAGTTAAAGCCGGGCAACCGCTATCACAAGCTCTGCGTCGCCATCCGCGTTATTTTG
ATGATTTATATTGCGATTTAGTGGCATCGGGTGAGCAATCTGGTGCTTTAGATAAAATATTCGACCGCGTTGCTATTTAT
AAAGAGAAGTCTGAAGCGCTTAAATCAAAAATTAAAAAAGCGATGTTTTACCCTATTGCGGTATTAGTTATCGCACTTAT
TGTTACCTCTATATTACTAATATTTGTAGTGCCGCAATTTCAGGATATTTTTGCCGGTTTTGGCGCTGAGCTCCCAGCCT
TTACTTTGTTTGTAATTGCTATATCGGAATTTATGCAGGAATATTGGTGGATGATGCTAATAGTAATTGTTGCATTTGGC
TGGGCATTTAAAGAGGCCAAGCTAAAAAGTTTAAAACTCCGTGATGCTACCGACCGAGCAGTATTAAAGCTACCTGTTAT
AGGCATGATTTTAAATAAAGCCGCCGTTGCCCGTTATGCTCGTACGCTCTCGACCACCTTTGCGGCTGGTGTGCCGCTAG
TTGATGCGCTGGACTCTGCTGCAGGCGCCTCGGGTAATGCGGTTTATCGTTATGCTATTTTAGATATTAAAGCCGAGGTT
AGCTCGGGCAACCAAATGAACTGGGCTATGCGTAACTCCAAAATATTCCCCGATATGGTAATACAAATGGTGGCTATTGG
TGAGGAGTCGGGTTCGCTCGATGGCATGCTAGGTAAAGTAGCAACTATTTATGAGCAAGAAGTTGATGATGCGGTAGATG
GGCTCTCAAGCTTGCTAGAACCGATGATTATGGCAGTACTTGGCGTATTGGTTGGTGGTTTAATTGTTGCCATGTACTTG
CCTATATTCCAACTTGGCTCTGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.858

100

0.619
  pilC Acinetobacter baumannii D1279779

55.5

97.8

0.543
  pilC Legionella pneumophila strain ERS1305867

55.25

97.8

0.54
  pilC Acinetobacter baylyi ADP1

53.827

99.022

0.533
  pilC Vibrio cholerae strain A1552

44.25

97.8

0.433
  pilG Neisseria meningitidis 44/76-A

43.478

95.599

0.416
  pilG Neisseria gonorrhoeae MS11

43.223

95.599

0.413
  pilC Vibrio campbellii strain DS40M4

42

97.8

0.411