Detailed information NTG0874981

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RB215_RS01920
• Genome accession: NZ_CP133571
• Coordinates: 399090..399974 (-)
• Length: 294 a.a.
• NCBI ID: WP_309216749.1
• Uniprot ID: A0AA51S8G8
• Organism: Pseudoalteromonas sp. HL-AS2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 394090..404974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB215_RS01895 (RB215_01895)	-	394700..395389 (-)	690	WP_179807187.1	response regulator transcription factor	-
RB215_RS01900 (RB215_01900)	-	395554..396039 (+)	486	WP_011327087.1	Spy/CpxP family protein refolding chaperone	-
RB215_RS01905 (RB215_01905)	yacG	396276..396506 (-)	231	WP_011327088.1	DNA gyrase inhibitor YacG	-
RB215_RS01910 (RB215_01910)	pilB	396662..398335 (-)	1674	WP_309216747.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RB215_RS01915 (RB215_01915)	coaE	398456..399088 (-)	633	WP_309216748.1	dephospho-CoA kinase	-
RB215_RS01920 (RB215_01920)	pilD	399090..399974 (-)	885	WP_309216749.1	A24 family peptidase	Machinery gene
RB215_RS01925 (RB215_01925)	pilC	400011..401240 (-)	1230	WP_309216750.1	type II secretion system F family protein	Machinery gene
RB215_RS01930 (RB215_01930)	-	401324..401770 (-)	447	WP_309216752.1	pilin	-
RB215_RS01935 (RB215_01935)	nadC	402308..403153 (-)	846	WP_309216753.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RB215_RS01940 (RB215_01940)	ampD	403473..404027 (+)	555	WP_309216754.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
RB215_RS01945 (RB215_01945)	ampE	404041..404892 (+)	852	WP_011327100.1	beta-lactamase regulator AmpE	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32431.66 Da
• Isoelectric Point: 7.8487

>NTDB_id=874981 RB215_RS01920 WP_309216749.1 399090..399974(-) (pilD) [Pseudoalteromonas sp. HL-AS2]
MQSIIEVMQSQLWFYLTTVGLISLCIGSFLNVVIYRLPLMMQREWQGECRLLLESELKNNKANTNDPFNLVKPNSTCPKC
KTAIKAWQNIPVISWLFLKGKCASCSNPISARYPIVEAITALLSLVVAYKLGATEQALLYIVITWALVALTFVDIDHMLL
PDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSLLTIILL
SSVVGAIIGIALLTIQGKDKATPIPFGPYLAIAGWITMLWGEQLQTSYFNVIGY

Nucleotide

• Length: 885 bp

>NTDB_id=874981 RB215_RS01920 WP_309216749.1 399090..399974(-) (pilD) [Pseudoalteromonas sp. HL-AS2]
ATGCAAAGTATTATAGAAGTAATGCAAAGCCAACTGTGGTTTTACTTAACCACAGTTGGCTTAATTAGTTTATGCATTGG
TAGCTTTCTAAATGTAGTTATTTACCGCTTACCACTAATGATGCAACGCGAATGGCAAGGCGAATGTCGGCTACTTTTAG
AAAGCGAACTTAAAAATAATAAAGCAAACACCAACGATCCTTTTAATTTAGTAAAGCCCAACTCTACCTGCCCCAAATGT
AAAACTGCAATAAAAGCGTGGCAAAACATTCCTGTTATTAGCTGGTTATTTTTAAAAGGTAAATGCGCAAGTTGTAGTAA
CCCCATATCGGCTCGCTACCCTATTGTAGAGGCAATAACTGCACTATTAAGCTTAGTTGTTGCGTATAAGCTGGGCGCTA
CCGAGCAGGCTTTACTTTATATAGTAATTACTTGGGCTTTAGTGGCACTTACCTTTGTTGATATTGACCATATGTTACTG
CCCGACCAAATTACCCTACCGCTTGTATGGCTGGCACTTATTGCTGCAGTGCTTGGCTATACCGTTACCCCAACTGATGC
CATTATTGGTGCTGCTTGCGGCTATTTAAGCTTGTGGAGCGTATTCTGGTTATTTAAATTACTTACCGGTAAAGAAGGCA
TGGGCTATGGCGATTTTAAATTACTTGCCGTGTTTGGTGCTTTGCTTGGCTGGCAATCGTTATTAACCATTATTTTGCTT
TCGAGCGTAGTGGGCGCAATTATTGGTATTGCGCTATTAACTATTCAGGGTAAAGACAAAGCCACCCCCATTCCGTTTGG
CCCCTACCTTGCTATTGCAGGCTGGATCACCATGTTATGGGGCGAGCAATTGCAAACTAGTTACTTTAATGTAATTGGTT
ACTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.903	98.299	0.51
pilD	Acinetobacter baumannii D1279779	51.736	97.959	0.507
pilD	Acinetobacter nosocomialis M2	51.389	97.959	0.503
pilD	Vibrio campbellii strain DS40M4	51.211	98.299	0.503
pilD	Neisseria gonorrhoeae MS11	45.627	89.456	0.408