Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RDV54_RS04645 Genome accession   NZ_CP133471
Coordinates   943740..944210 (-) Length   156 a.a.
NCBI ID   WP_000609602.1    Uniprot ID   A0A081QZK0
Organism   Streptococcus mitis strain LMG 14557     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 938740..949210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS04610 (RDV54_04610) - 938746..939681 (-) 936 WP_000036046.1 manganese-dependent inorganic pyrophosphatase -
  RDV54_RS04615 (RDV54_04615) - 939860..940156 (-) 297 WP_000349617.1 GIY-YIG nuclease family protein -
  RDV54_RS04620 (RDV54_04620) - 940146..940895 (-) 750 WP_033685376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RDV54_RS04625 (RDV54_04625) - 940948..941310 (-) 363 WP_000689605.1 S1 RNA-binding domain-containing protein -
  RDV54_RS04630 (RDV54_04630) - 941312..942712 (-) 1401 WP_020903466.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RDV54_RS04635 (RDV54_04635) - 942792..943295 (-) 504 WP_004239245.1 GNAT family N-acetyltransferase -
  RDV54_RS04640 (RDV54_04640) rpsR 943469..943708 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  RDV54_RS04645 (RDV54_04645) ssbA 943740..944210 (-) 471 WP_000609602.1 single-stranded DNA-binding protein SsbA Machinery gene
  RDV54_RS04650 (RDV54_04650) rpsF 944222..944512 (-) 291 WP_001151778.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17354.17 Da        Isoelectric Point: 4.9164

>NTDB_id=874480 RDV54_RS04645 WP_000609602.1 943740..944210(-) (ssbA) [Streptococcus mitis strain LMG 14557]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPSSNYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=874480 RDV54_RS04645 WP_000609602.1 943740..944210(-) (ssbA) [Streptococcus mitis strain LMG 14557]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGTCACACAGGTGGAGCTTATTCTGCACCAAGTTCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081QZK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.596
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378