Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WJ438_RS27150 Genome accession   NZ_CP149447
Coordinates   5747968..5748648 (+) Length   226 a.a.
NCBI ID   WP_406727546.1    Uniprot ID   -
Organism   Streptomyces sp. GD-15H     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5742968..5753648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ438_RS27120 (WJ438_27085) - 5744489..5744683 (+) 195 WP_109379105.1 hypothetical protein -
  WJ438_RS27125 (WJ438_27090) - 5744704..5744928 (+) 225 WP_406727544.1 hypothetical protein -
  WJ438_RS27140 (WJ438_27105) tig 5745488..5746927 (+) 1440 WP_406727545.1 trigger factor -
  WJ438_RS27145 (WJ438_27110) clpP 5747245..5747853 (+) 609 WP_406729824.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJ438_RS27150 (WJ438_27115) clpP 5747968..5748648 (+) 681 WP_406727546.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WJ438_RS27155 (WJ438_27120) clpX 5748837..5750123 (+) 1287 WP_406727547.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  WJ438_RS27160 (WJ438_27125) - 5750203..5751153 (-) 951 WP_406727548.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25074.44 Da        Isoelectric Point: 4.5790

>NTDB_id=873997 WJ438_RS27150 WP_406727546.1 5747968..5748648(+) (clpP) [Streptomyces sp. GD-15H]
MNDFPGSGLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNASLR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=873997 WJ438_RS27150 WP_406727546.1 5747968..5748648(+) (clpP) [Streptomyces sp. GD-15H]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACCCGTGCCGAGTACACCGGCCCCGCGGCCGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCTCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTCACGGCGATCTACGACACCATGCAGTA
CGTGAAGCCCGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTACTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTTCACAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGGT
CGAGAAGATCCGCGAGGACATCGAGCGGGACAAGATCCTCACGGCCGAGGACGCGCTGAGCTACGGTCTGATCGACCAGA
TCATCACCACCCGGAAGATGGACAACGCCAGCCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.186

0.425
  clpP Streptococcus mutans UA159

44.39

90.708

0.403
  clpP Streptococcus pyogenes MGAS315

44.776

88.938

0.398
  clpP Streptococcus pyogenes JRS4

44.776

88.938

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

89.381

0.398
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

89.381

0.389
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385