Detailed information NTG0873998

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: WJ438_RS27155
• Genome accession: NZ_CP149447
• Coordinates: 5748837..5750123 (+)
• Length: 428 a.a.
• NCBI ID: WP_406727547.1
• Uniprot ID: -
• Organism: Streptomyces sp. GD-15H
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5743837..5755123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ438_RS27120 (WJ438_27085)	-	5744489..5744683 (+)	195	WP_109379105.1	hypothetical protein	-
WJ438_RS27125 (WJ438_27090)	-	5744704..5744928 (+)	225	WP_406727544.1	hypothetical protein	-
WJ438_RS27140 (WJ438_27105)	tig	5745488..5746927 (+)	1440	WP_406727545.1	trigger factor	-
WJ438_RS27145 (WJ438_27110)	clpP	5747245..5747853 (+)	609	WP_406729824.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJ438_RS27150 (WJ438_27115)	clpP	5747968..5748648 (+)	681	WP_406727546.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJ438_RS27155 (WJ438_27120)	clpX	5748837..5750123 (+)	1287	WP_406727547.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WJ438_RS27160 (WJ438_27125)	-	5750203..5751153 (-)	951	WP_406727548.1	hypothetical protein	-
WJ438_RS27165 (WJ438_27130)	-	5751292..5753916 (+)	2625	WP_406727549.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46780.59 Da
• Isoelectric Point: 4.7788

>NTDB_id=873998 WJ438_RS27155 WP_406727547.1 5748837..5750123(+) (clpX) [Streptomyces sp. GD-15H]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKRELESKDQFEQVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGSGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=873998 WJ438_RS27155 WP_406727547.1 5748837..5750123(+) (clpX) [Streptomyces sp. GD-15H]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTCGCCGAGAGCA
GTGAGGTCCGCTGGGAGGAACTGCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAACCG
GCGAAGAAAGCCCTCTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCGGGGGAGAACGGCGGCGCCCAGGGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGGCCCACCGGCTCCGGCAAGACCCTCCTCGCCCAGA
CCCTCGCCCGCATGCTGAACGTCCCGTTCGCGATCGCGGACGCCACGGCGCTGACCGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTCGAGGGCACCACGGCGTCCGTCCCCCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCCGGCCTGGAGAAGATCATCGAGGGCCGCGCGGGAGC
CAAGGGCATCGGCTTCGGCGCGACCATCCGCTCCAAGCGGGAACTGGAGTCCAAGGACCAGTTCGAGCAGGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTCCCGGTGATCACCTCGGTCCACAACCTCGACCGC
GAGGCCCTGCTGCAGATCCTGGTCGAGCCGCGCAACGCGCTCGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTGGAAGCCATCGCCGATCAGGCCATCCTCCGTCAGACCGGTGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTCATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
GCGGACGTGGTCCTCTCCAACGTCAACCCGACCCTGATCCCGCGCGACGCCCGCGGCCGCGGATCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.779	94.159	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523