NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	WJ438_RS27145	Genome accession	NZ_CP149447
Coordinates	5747245..5747853 (+)	Length	202 a.a.
NCBI ID	WP_406729824.1	Uniprot ID	-
Organism	Streptomyces sp. GD-15H
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5742245..5752853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ438_RS27115 (WJ438_27080)	-	5742627..5743834 (-)	1208	Protein_5353	acyltransferase family protein	-
WJ438_RS27120 (WJ438_27085)	-	5744489..5744683 (+)	195	WP_109379105.1	hypothetical protein	-
WJ438_RS27125 (WJ438_27090)	-	5744704..5744928 (+)	225	WP_406727544.1	hypothetical protein	-
WJ438_RS27140 (WJ438_27105)	tig	5745488..5746927 (+)	1440	WP_406727545.1	trigger factor	-
WJ438_RS27145 (WJ438_27110)	clpP	5747245..5747853 (+)	609	WP_406729824.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJ438_RS27150 (WJ438_27115)	clpP	5747968..5748648 (+)	681	WP_406727546.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WJ438_RS27155 (WJ438_27120)	clpX	5748837..5750123 (+)	1287	WP_406727547.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WJ438_RS27160 (WJ438_27125)	-	5750203..5751153 (-)	951	WP_406727548.1	hypothetical protein	-

Sequence

Protein

Download Length: 202 a.a. Molecular weight: 21326.21 Da Isoelectric Point: 4.7892

                                >NTDB_id=873996 WJ438_RS27145 WP_406729824.1 5747245..5747853(+) (clpP) [Streptomyces sp. GD-15H]

MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF

IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSASLAGSASDIKIHAERLLHTKRRMAELTAQHTGQTVE

QVTRDSDRDRWFDAFEAKGYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide

Download Length: 609 bp

                                >NTDB_id=873996 WJ438_RS27145 WP_406729824.1 5747245..5747853(+) (clpP) [Streptomyces sp. GD-15H]

ATGCCTTCAGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGATCCGG

ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGCATGGCGATCTACGACACCATGCAGTTC

ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGTCAGTTCCTGCTCAGCGCGGGCACGCCCGG

CAAGCGCTTCGCGCTGCCGAACGCCGAGATTTTGATCCACCAGCCCTCCGCCAGCCTGGCCGGCTCGGCCTCGGACATCA

AGATCCACGCCGAGCGGCTGCTGCACACCAAGAGGCGCATGGCCGAGCTCACCGCGCAGCACACCGGCCAGACGGTCGAG

CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGGGTACGGCCTCATCGACGACGTCAT

CCCCACGGCCGCGGGCATGCCGGGCGGCGGCGGCACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	84.653	0.49
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.432	91.584	0.48
clpP	Lactococcus lactis subsp. cremoris KW2	52.174	91.089	0.475
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.63	91.089	0.47
clpP	Streptococcus mutans UA159	53.757	85.644	0.46
clpP	Streptococcus pyogenes MGAS315	52.601	85.644	0.45
clpP	Streptococcus pyogenes JRS4	52.601	85.644	0.45
clpP	Streptococcus thermophilus LMG 18311	52.023	85.644	0.446
clpP	Streptococcus thermophilus LMD-9	52.023	85.644	0.446
clpP	Streptococcus pneumoniae Rx1	51.445	85.644	0.441
clpP	Streptococcus pneumoniae D39	51.445	85.644	0.441
clpP	Streptococcus pneumoniae R6	51.445	85.644	0.441
clpP	Streptococcus pneumoniae TIGR4	51.445	85.644	0.441

Detailed information NTG0873996